Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __getitem__() (canns.analyzer.slow_points.fixed_points.FixedPoints method) (canns.analyzer.slow_points.FixedPoints method) __len__() (canns.analyzer.slow_points.fixed_points.FixedPoints method) (canns.analyzer.slow_points.FixedPoints method) __post_init__() (canns.analyzer.data.cell_classification.io.matlab_loader.TuningCurve method) (canns.analyzer.data.cell_classification.io.TuningCurve method) (canns.analyzer.data.cell_classification.TuningCurve method) (canns.analyzer.visualization.AnimationConfig method) (canns.analyzer.visualization.core.AnimationConfig method) (canns.analyzer.visualization.core.config.AnimationConfig method) (canns.analyzer.visualization.core.config.PlotConfig method) (canns.analyzer.visualization.core.PlotConfig method) (canns.analyzer.visualization.PlotConfig method) __version__ (in module canns) A A (canns.models.basic.cann.BaseCANN1D attribute) a (canns.models.basic.cann.BaseCANN1D attribute) A (canns.models.basic.cann.BaseCANN2D attribute) a (canns.models.basic.cann.BaseCANN2D attribute) A (canns.models.basic.grid_cell.GridCell2DPosition attribute) a (canns.models.basic.grid_cell.GridCell2DPosition attribute) A (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DPosition attribute) a (canns.models.basic.GridCell2DPosition attribute) A (canns.models.basic.GridCell2DVelocity attribute) a (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] A (canns.models.basic.hierarchical_model.GridCell attribute), [1] a (canns.models.basic.hierarchical_model.GridCell attribute), [1] A (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) a (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) A (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) a (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) A (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) a (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) A_minus (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) A_plus (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) AbstractAnalysisMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.base) accessible_indices (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (canns.task.GeodesicDistanceResult attribute) (canns.task.MovementCostGrid attribute) (canns.task.navigation_base.GeodesicDistanceResult attribute) (canns.task.navigation_base.MovementCostGrid attribute) accessible_mask (canns.task.MovementCostGrid property) (canns.task.navigation_base.MovementCostGrid property) action_back_to_preprocess() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) action_change_workdir() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) action_continue_to_analysis() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) action_help() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) action_policy (canns.task.open_loop_navigation.CustomOpenLoopNavigationTask attribute) action_quit() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) action_refresh() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) action_run() (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) action_run_action() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) action_run_analysis() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) action_stop() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) ActionPolicy (class in canns.task.open_loop_navigation) activate() (canns.models.basic.hierarchical_model.NonRecUnits method) activation (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) active_times (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] adaptation_strength (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) add_log() (canns.pipeline.asa.widgets.LogViewer method) after_duration (canns.task.tracking.PopulationCoding1D attribute) (canns.task.tracking.PopulationCoding2D attribute) agent (canns.task.navigation_base.BaseNavigationTask attribute) agent_params (canns.task.navigation_base.BaseNavigationTask attribute) align_coords_to_position_1d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.path) align_coords_to_position_2d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.path) aligned_pos (canns.pipeline.asa_gui.core.PipelineRunner property) (canns.pipeline.asa_gui.core.runner.PipelineRunner property) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) alpha (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) AmariHopfieldNetwork (class in canns.models.brain_inspired) (class in canns.models.brain_inspired.hopfield) ampli (canns.analyzer.data.asa.fly_roi.SiteBump attribute) ampli_min (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) analysis (canns.pipeline.gallery.state.GalleryState attribute) analysis_completed (canns.pipeline.asa_gui.views.pages.analysis_page.AnalysisPage attribute) (canns.pipeline.asa_gui.views.pages.AnalysisPage attribute) analysis_help_markdown() (in module canns.pipeline.asa_gui.views.help_content) analysis_mode (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) analysis_params (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) AnalysisConfig (class in canns.pipeline.asa_gui.models) (class in canns.pipeline.asa_gui.models.config) AnalysisController (class in canns.pipeline.asa_gui.controllers) (class in canns.pipeline.asa_gui.controllers.analysis_controller) AnalysisPage (class in canns.pipeline.asa_gui.views.pages) (class in canns.pipeline.asa_gui.views.pages.analysis_page) AnalysisWorker (class in canns.pipeline.asa_gui.core) (class in canns.pipeline.asa_gui.core.worker) analyze_recall() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) ang_speed_gains (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) ang_velocity (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) angle (canns.models.basic.hierarchical_model.BandCell attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] angles (in module canns.analyzer.data.cell_classification.utils.circular_stats) angular_distance (in module canns.analyzer.data.cell_classification.utils.circular_stats) angular_mean (in module canns.analyzer.data.cell_classification.utils.circular_stats) angular_std (in module canns.analyzer.data.cell_classification.utils.circular_stats) anim_progress (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) AnimationBackend (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.backend) AnimationConfig (class in canns.analyzer.visualization) (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.config) AnimationError AntiHebbianTrainer (class in canns.trainer) (class in canns.trainer.hebbian) app (in module canns.pipeline.asa.__main__) (in module canns.pipeline.gallery.__main__) append_log_file() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) apply_angle_scale() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.path) apply_hebbian_learning() (canns.models.brain_inspired.BrainInspiredModel method) apply_language() (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.cohomap_mode.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.cohospace_mode.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.decode_mode.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.fr_mode.FRMode method) (canns.pipeline.asa_gui.analysis_modes.frm_mode.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMode method) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.pathcompare_mode.PathCompareMode method) (canns.pipeline.asa_gui.analysis_modes.PathCompareMode method) (canns.pipeline.asa_gui.analysis_modes.tda_mode.TDAMode method) (canns.pipeline.asa_gui.analysis_modes.TDAMode method) (canns.pipeline.asa_gui.views.pages.analysis_page.AnalysisPage method) (canns.pipeline.asa_gui.views.pages.AnalysisPage method) (canns.pipeline.asa_gui.views.pages.preprocess_page.PreprocessPage method) (canns.pipeline.asa_gui.views.pages.PreprocessPage method) apply_meta() (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode method) apply_preset() (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.cohomap_mode.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.decode_mode.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.tda_mode.TDAMode method) (canns.pipeline.asa_gui.analysis_modes.TDAMode method) apply_preset_params() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) apply_ranges() (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.cohospace_mode.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.fr_mode.FRMode method) (canns.pipeline.asa_gui.analysis_modes.frm_mode.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMode method) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode method) artifacts (canns.pipeline.asa.runner.PipelineResult attribute) (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.PipelineResult attribute) (canns.pipeline.asa_gui.core.runner.PipelineResult attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.asa_gui.models.job.JobResult attribute) (canns.pipeline.asa_gui.models.JobResult attribute) (canns.pipeline.gallery.runner.GalleryResult attribute) (canns.pipeline.gallery.state.GalleryState attribute) ArtifactsTab (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.artifacts_tab) artists (canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (canns.analyzer.visualization.OptimizedAnimationBase attribute) as_1d() (in module canns.analyzer.data.asa.path) asa_file (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) asa_main() (in module canns.pipeline) ASAApp (class in canns.pipeline) (class in canns.pipeline.asa) (class in canns.pipeline.asa.app) ASAGuiApp (class in canns.pipeline.asa_gui.app) (in module canns.pipeline) (in module canns.pipeline.asa_gui.main_window) aspect (canns.task.navigation_base.BaseNavigationTask attribute) asyn (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) AUTO (canns.analyzer.visualization.core.AnimationBackend attribute) (canns.analyzer.visualization.core.backend.AnimationBackend attribute) auto_parallel_threshold (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] auto_viewer (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) autocorrelation_2d() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.correlation) average_firing_rate_plot() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spike_plots) ax (canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (canns.analyzer.visualization.OptimizedAnimationBase attribute) B b_log (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) b_one (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) backend (canns.analyzer.visualization.core.backend.BackendSelection attribute) (canns.analyzer.visualization.core.BackendSelection attribute) BackendSelection (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.backend) band_cell_x (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cell_y (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cell_z (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cells (canns.models.basic.hierarchical_model.BandCell attribute), [1] band_x_fr (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] band_y_fr (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] BandCell (class in canns.models.basic.hierarchical_model) BASE_RADIUS (canns.analyzer.data.asa.fly_roi.Constants attribute) BASE_URL (in module canns.data.datasets) BaseCANN (class in canns.models.basic.cann) BaseCANN1D (class in canns.models.basic.cann) BaseCANN2D (class in canns.models.basic.cann) BaseNavigationTask (class in canns.task.navigation_base) batch_update() (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) BatchMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.batch_mode) BCMTrainer (class in canns.trainer) (class in canns.trainer.bcm) before_duration (canns.task.tracking.PopulationCoding1D attribute) (canns.task.tracking.PopulationCoding2D attribute) benchmark() (in module canns.utils) (in module canns.utils.benchmark) beta (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) BINDINGS (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) (canns.pipeline.launcher.ModePicker attribute) bins (canns.analyzer.data.cell_classification.io.matlab_loader.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.io.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.TuningCurve attribute), [1] bitrate (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) boundary (canns.task.navigation_base.BaseNavigationTask attribute) boundary_conditions (canns.task.navigation_base.BaseNavigationTask attribute) BrainInspiredModel (class in canns.models.brain_inspired) BrainInspiredModelGroup (class in canns.models.brain_inspired) btn_labels (canns.analyzer.data.cell_classification.BTNResult attribute) (canns.analyzer.data.cell_classification.core.btn.BTNResult attribute) (canns.analyzer.data.cell_classification.core.BTNResult attribute) btn_next (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) btn_open_anim (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) btn_open_folder (canns.pipeline.asa_gui.views.widgets.artifacts_tab.ArtifactsTab attribute) (canns.pipeline.asa_gui.views.widgets.ArtifactsTab attribute) btn_prev (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) btn_show (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) BTNAnalyzer (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.btn) BTNConfig (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.btn) BTNResult (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.btn) build_movement_cost_grid() (canns.task.navigation_base.BaseNavigationTask method) bump_selection (canns.analyzer.data.asa.CANN1DPlotConfig attribute) (canns.analyzer.data.asa.fly_roi.CANN1DPlotConfig attribute) BumpFitsConfig (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.fly_roi) C calculate_dist() (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) calculate_input_from_conjgc() (canns.models.basic.theta_sweep_model.GridCellNetwork method) calculate_theta_modulation() (in module canns.models.basic.theta_sweep_model) calculate_theta_sweep_data() (canns.task.open_loop_navigation.OpenLoopNavigationTask method) can_redo() (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) can_undo() (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) candidate_centers (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] CANN1D (class in canns.models.basic) (class in canns.models.basic.cann) CANN1D_DEFAULTS (in module canns.pipeline.gallery.app) CANN1D_SFA (class in canns.models.basic) (class in canns.models.basic.cann) CANN1DError CANN1DPlotConfig (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.fly_roi) CANN2D (class in canns.models.basic) (class in canns.models.basic.cann) CANN2D_DEFAULTS (in module canns.pipeline.gallery.app) CANN2D_SFA (class in canns.models.basic) (class in canns.models.basic.cann) CANN2DError, [1] CANN2DPlotConfig (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.config) canns module canns.__main__ module canns.analyzer module canns.analyzer.data module canns.analyzer.data.asa module canns.analyzer.data.asa.coho module canns.analyzer.data.asa.cohomap module canns.analyzer.data.asa.cohomap_vectors module canns.analyzer.data.asa.cohospace module canns.analyzer.data.asa.cohospace_phase_centers module canns.analyzer.data.asa.cohospace_scatter module canns.analyzer.data.asa.config module canns.analyzer.data.asa.decode module canns.analyzer.data.asa.embedding module canns.analyzer.data.asa.fly_roi module canns.analyzer.data.asa.fr module canns.analyzer.data.asa.path module canns.analyzer.data.asa.plotting module canns.analyzer.data.asa.tda module canns.analyzer.data.asa.utils module canns.analyzer.data.cell_classification module canns.analyzer.data.cell_classification.core module canns.analyzer.data.cell_classification.core.btn module canns.analyzer.data.cell_classification.core.grid_cells module canns.analyzer.data.cell_classification.core.grid_modules_leiden module canns.analyzer.data.cell_classification.core.head_direction module canns.analyzer.data.cell_classification.core.spatial_analysis module canns.analyzer.data.cell_classification.io module canns.analyzer.data.cell_classification.io.matlab_loader module canns.analyzer.data.cell_classification.utils module canns.analyzer.data.cell_classification.utils.circular_stats module canns.analyzer.data.cell_classification.utils.correlation module canns.analyzer.data.cell_classification.utils.geometry module canns.analyzer.data.cell_classification.utils.image_processing module canns.analyzer.data.cell_classification.visualization module canns.analyzer.data.cell_classification.visualization.btn_plots module canns.analyzer.data.cell_classification.visualization.grid_plots module canns.analyzer.data.cell_classification.visualization.hd_plots module canns.analyzer.metrics module canns.analyzer.metrics.spatial_metrics module canns.analyzer.metrics.systematic_ratemap module canns.analyzer.metrics.utils module canns.analyzer.model_specific module canns.analyzer.model_specific.hopfield module canns.analyzer.slow_points module canns.analyzer.slow_points.checkpoint module canns.analyzer.slow_points.finder module canns.analyzer.slow_points.fixed_points module canns.analyzer.slow_points.visualization module canns.analyzer.visualization module canns.analyzer.visualization.core module canns.analyzer.visualization.core.animation module canns.analyzer.visualization.core.backend module canns.analyzer.visualization.core.config module canns.analyzer.visualization.core.jupyter_utils module canns.analyzer.visualization.core.rendering module canns.analyzer.visualization.core.writers module canns.analyzer.visualization.energy_plots module canns.analyzer.visualization.spatial_plots module canns.analyzer.visualization.spike_plots module canns.analyzer.visualization.theta_sweep_plots module canns.analyzer.visualization.tuning_plots module canns.data module canns.data.datasets module canns.data.loaders module canns.models module canns.models.basic module canns.models.basic.cann module canns.models.basic.grid_cell module canns.models.basic.hierarchical_model module canns.models.basic.theta_sweep_model module canns.models.brain_inspired module canns.models.brain_inspired.hopfield module canns.models.brain_inspired.linear module canns.models.brain_inspired.spiking module canns.models.hybrid module canns.pipeline module canns.pipeline.__main__ module canns.pipeline.asa module canns.pipeline.asa.__main__ module canns.pipeline.asa.app module canns.pipeline.asa.runner module canns.pipeline.asa.screens module canns.pipeline.asa.state module canns.pipeline.asa.widgets module canns.pipeline.asa_gui module canns.pipeline.asa_gui.__main__ module canns.pipeline.asa_gui.analysis_modes module canns.pipeline.asa_gui.analysis_modes.base module canns.pipeline.asa_gui.analysis_modes.batch_mode module canns.pipeline.asa_gui.analysis_modes.cohomap_mode module canns.pipeline.asa_gui.analysis_modes.cohospace_mode module canns.pipeline.asa_gui.analysis_modes.decode_mode module canns.pipeline.asa_gui.analysis_modes.fr_mode module canns.pipeline.asa_gui.analysis_modes.frm_mode module canns.pipeline.asa_gui.analysis_modes.gridscore_mode module canns.pipeline.asa_gui.analysis_modes.pathcompare_mode module canns.pipeline.asa_gui.analysis_modes.tda_mode module canns.pipeline.asa_gui.app module canns.pipeline.asa_gui.controllers module canns.pipeline.asa_gui.controllers.analysis_controller module canns.pipeline.asa_gui.controllers.preprocess_controller module canns.pipeline.asa_gui.core module canns.pipeline.asa_gui.core.cache module canns.pipeline.asa_gui.core.runner module canns.pipeline.asa_gui.core.state module canns.pipeline.asa_gui.core.worker module canns.pipeline.asa_gui.main_window module canns.pipeline.asa_gui.models module canns.pipeline.asa_gui.models.config module canns.pipeline.asa_gui.models.job module canns.pipeline.asa_gui.models.presets module canns.pipeline.asa_gui.resources module canns.pipeline.asa_gui.utils module canns.pipeline.asa_gui.utils.formatters module canns.pipeline.asa_gui.utils.io_adapters module canns.pipeline.asa_gui.utils.validators module canns.pipeline.asa_gui.views module canns.pipeline.asa_gui.views.help_content module canns.pipeline.asa_gui.views.pages module canns.pipeline.asa_gui.views.pages.analysis_page module canns.pipeline.asa_gui.views.pages.preprocess_page module canns.pipeline.asa_gui.views.panels module canns.pipeline.asa_gui.views.widgets module canns.pipeline.asa_gui.views.widgets.artifacts_tab module canns.pipeline.asa_gui.views.widgets.drop_zone module canns.pipeline.asa_gui.views.widgets.file_list module canns.pipeline.asa_gui.views.widgets.gridscore_tab module canns.pipeline.asa_gui.views.widgets.help_dialog module canns.pipeline.asa_gui.views.widgets.image_tab module canns.pipeline.asa_gui.views.widgets.image_viewer module canns.pipeline.asa_gui.views.widgets.log_box module canns.pipeline.asa_gui.views.widgets.pathcompare_tab module canns.pipeline.asa_gui.views.widgets.popup_combo module canns.pipeline.gallery module canns.pipeline.gallery.__main__ module canns.pipeline.gallery.app module canns.pipeline.gallery.runner module canns.pipeline.gallery.state module canns.pipeline.launcher module canns.task module canns.task.closed_loop_navigation module canns.task.navigation_base module canns.task.open_loop_navigation module canns.task.tracking module canns.trainer module canns.trainer.bcm module canns.trainer.hebbian module canns.trainer.oja module canns.trainer.sanger module canns.trainer.stdp module canns.trainer.utils module canns.typing module canns.utils module canns.utils.benchmark module canns.utils.example_outputs module cart2pol() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.geometry) cell_num (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] center (canns.models.basic.hierarchical_model.BandCell attribute), [1] (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] center_ideal (canns.models.basic.hierarchical_model.BandCell attribute), [1] center_of_mass (canns.analyzer.data.cell_classification.io.matlab_loader.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.io.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.TuningCurve attribute), [1] center_phase (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] center_position (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] center_radius (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] centerI (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) check_cached_artifacts() (in module canns.pipeline.asa.state) check_terminal_size() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) circ_dist() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.circular_stats) circ_dist2() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.circular_stats) circ_mean() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.circular_stats) circ_r() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.circular_stats) circ_rtest() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.circular_stats) circ_std() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.circular_stats) circle_period() (canns.models.basic.hierarchical_model.GridCell method) clabel (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) classify_btn() (canns.analyzer.data.cell_classification.BTNAnalyzer method) (canns.analyzer.data.cell_classification.core.btn.BTNAnalyzer method) (canns.analyzer.data.cell_classification.core.BTNAnalyzer method) classify_hd_cell() (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer method) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer method) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer method) clear() (canns.pipeline.asa.widgets.LogViewer method) (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) clicked (canns.pipeline.asa_gui.main_window.LogoLabel attribute) clone() (canns.analyzer.data.asa.fly_roi.SiteBump method) ClosedLoopNavigationTask (class in canns.task.closed_loop_navigation) cluster_sizes (canns.analyzer.data.cell_classification.BTNResult attribute) (canns.analyzer.data.cell_classification.core.btn.BTNResult attribute) (canns.analyzer.data.cell_classification.core.BTNResult attribute) codec (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) coeff (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] cohomap() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohomap) cohomap_vectors() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohomap_vectors) CohoMapMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.cohomap_mode) cohospace() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace) cohospace_neuron_1d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) cohospace_neuron_2d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) cohospace_phase_centers() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_phase_centers) cohospace_population_1d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) cohospace_population_2d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) cohospace_trajectory_1d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) cohospace_trajectory_2d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) CohoSpaceMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.cohospace_mode) collect_analysis_params() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) collect_params() (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.batch_mode.BatchMode method) (canns.pipeline.asa_gui.analysis_modes.BatchMode method) (canns.pipeline.asa_gui.analysis_modes.cohomap_mode.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.cohospace_mode.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.decode_mode.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.fr_mode.FRMode method) (canns.pipeline.asa_gui.analysis_modes.frm_mode.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMode method) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.pathcompare_mode.PathCompareMode method) (canns.pipeline.asa_gui.analysis_modes.PathCompareMode method) (canns.pipeline.asa_gui.analysis_modes.tda_mode.TDAMode method) (canns.pipeline.asa_gui.analysis_modes.TDAMode method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) color (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) compiled (canns.trainer.bcm.BCMTrainer attribute) (canns.trainer.BCMTrainer attribute) (canns.trainer.oja.OjaTrainer attribute) (canns.trainer.OjaTrainer attribute) (canns.trainer.sanger.SangerTrainer attribute) (canns.trainer.SangerTrainer attribute) (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) compiled_prediction (canns.trainer.Trainer attribute) compose() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.asa.screens.ErrorScreen method) (canns.pipeline.asa.screens.HelpScreen method) (canns.pipeline.asa.screens.TerminalSizeWarning method) (canns.pipeline.asa.screens.WorkdirScreen method) (canns.pipeline.asa.widgets.ImagePreview method) (canns.pipeline.asa.widgets.LogViewer method) (canns.pipeline.asa.widgets.ParamGroup method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) (canns.pipeline.launcher.ModePicker method) compute_2d_autocorrelation() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.grid_cells) compute_action() (canns.task.open_loop_navigation.ActionPolicy method) (canns.task.open_loop_navigation.StateAwareRasterScanPolicy method) compute_cohoscore_scatter_1d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) compute_cohoscore_scatter_2d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) compute_energy() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) compute_field_statistics() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.spatial_analysis) compute_file_hash() (in module canns.data.datasets) compute_firing_field() (in module canns.analyzer.metrics.spatial_metrics) compute_fr_heatmap_matrix() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.fr) compute_frm() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.fr) compute_geodesic_distance_matrix() (canns.task.navigation_base.BaseNavigationTask method) compute_grid_score() (in module canns.analyzer.metrics.spatial_metrics) compute_grid_spacing() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.spatial_analysis) compute_gridness_score() (canns.analyzer.data.cell_classification.core.grid_cells.GridnessAnalyzer method) (canns.analyzer.data.cell_classification.core.GridnessAnalyzer method) (canns.analyzer.data.cell_classification.GridnessAnalyzer method) compute_mvl() (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer method) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer method) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer method) compute_overlap() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) (canns.models.brain_inspired.AmariHopfieldNetwork method) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) compute_pattern_energies() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) compute_rate_map() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.spatial_analysis) compute_rate_map_from_binned() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.spatial_analysis) compute_running_average() (in module canns.trainer.utils) compute_spatial_autocorrelation() (in module canns.analyzer.metrics.spatial_metrics) compute_spatial_information() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.spatial_analysis) compute_systematic_ratemap() (in module canns.analyzer.metrics.systematic_ratemap) compute_tuning_curve() (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer method) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer method) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer method) compute_velocity_input() (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DVelocity method) compute_weight_symmetry_error() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) cond_id (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] config (canns.analyzer.data.cell_classification.BTNAnalyzer attribute) (canns.analyzer.data.cell_classification.core.btn.BTNAnalyzer attribute) (canns.analyzer.data.cell_classification.core.BTNAnalyzer attribute) (canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (canns.analyzer.visualization.OptimizedAnimationBase attribute) configure_form_layout() (in module canns.pipeline.asa_gui.analysis_modes.base) configure_progress() (canns.trainer.Trainer method) conj_input (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) conn_mat (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] conn_noise (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) Constants (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.config) (class in canns.analyzer.data.asa.fly_roi) coor_transform (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] coor_transform_inv (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) copy() (canns.pipeline.asa_gui.core.state.WorkflowState method) (canns.pipeline.asa_gui.core.WorkflowState method) cost_grid (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (canns.task.GeodesicDistanceResult attribute) (canns.task.navigation_base.BaseNavigationTask attribute) (canns.task.navigation_base.GeodesicDistanceResult attribute) costs (canns.task.MovementCostGrid attribute) (canns.task.navigation_base.MovementCostGrid attribute) create_1d_bump_animation() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.fly_roi) create_artists() (canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (canns.analyzer.visualization.core.OptimizedAnimationBase method) (canns.analyzer.visualization.OptimizedAnimationBase method) create_buffer() (in module canns.analyzer.visualization.core.animation) create_grid_cell_tracking_animation() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spatial_plots) create_optimized_writer() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.writers) create_params_widget() (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode method) (canns.pipeline.asa_gui.analysis_modes.batch_mode.BatchMode method) (canns.pipeline.asa_gui.analysis_modes.BatchMode method) (canns.pipeline.asa_gui.analysis_modes.cohomap_mode.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.CohoMapMode method) (canns.pipeline.asa_gui.analysis_modes.cohospace_mode.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.CohoSpaceMode method) (canns.pipeline.asa_gui.analysis_modes.decode_mode.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.DecodeMode method) (canns.pipeline.asa_gui.analysis_modes.fr_mode.FRMode method) (canns.pipeline.asa_gui.analysis_modes.frm_mode.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMMode method) (canns.pipeline.asa_gui.analysis_modes.FRMode method) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode method) (canns.pipeline.asa_gui.analysis_modes.pathcompare_mode.PathCompareMode method) (canns.pipeline.asa_gui.analysis_modes.PathCompareMode method) (canns.pipeline.asa_gui.analysis_modes.tda_mode.TDAMode method) (canns.pipeline.asa_gui.analysis_modes.TDAMode method) create_theta_sweep_grid_cell_animation() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.theta_sweep_plots) create_theta_sweep_place_cell_animation() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.theta_sweep_plots) CSS (canns.pipeline.launcher.ModePicker attribute) CSS_PATH (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) current_direction (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) current_height (canns.pipeline.asa.screens.TerminalSizeWarning attribute) current_page (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) current_stage (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) current_width (canns.pipeline.asa.screens.TerminalSizeWarning attribute) current_worker (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) CustomOpenLoopNavigationTask (class in canns.task.open_loop_navigation) D D (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] data (in module canns.analyzer.data.asa.fly_roi) DataLoadError, [1] DATASETS (in module canns.data) (in module canns.data.datasets) decode() (canns.models.basic.hierarchical_model.GaussRecUnits method) decode_circular_coordinates() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.decode) decode_circular_coordinates1() (in module canns.analyzer.data.asa.decode) decode_circular_coordinates_multi() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.decode) decode_position_from_activity() (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DVelocity method) decode_position_lsq() (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DVelocity method) decoded_pos (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] DecodeMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.decode_mode) decompose_jacobians() (canns.analyzer.slow_points.fixed_points.FixedPoints method) (canns.analyzer.slow_points.FixedPoints method) DEFAULT_CSS (canns.pipeline.asa.screens.ErrorScreen attribute) (canns.pipeline.asa.screens.HelpScreen attribute) (canns.pipeline.asa.screens.TerminalSizeWarning attribute) (canns.pipeline.asa.screens.WorkdirScreen attribute) (canns.pipeline.asa.widgets.ImagePreview attribute) (canns.pipeline.asa.widgets.LogViewer attribute) (canns.pipeline.asa.widgets.ParamGroup attribute) DEFAULT_DATA_DIR (in module canns.data) (in module canns.data.datasets) DEFAULT_DPI (canns.analyzer.data.asa.config.Constants attribute) (canns.analyzer.data.asa.Constants attribute) (canns.analyzer.data.asa.fly_roi.Constants attribute) DEFAULT_FIGSIZE (canns.analyzer.data.asa.config.Constants attribute) (canns.analyzer.data.asa.Constants attribute) (canns.analyzer.data.asa.fly_roi.Constants attribute) derivative (canns.models.basic.hierarchical_model.GridCell property) (canns.models.basic.theta_sweep_model.DirectionCellNetwork property) (canns.models.basic.theta_sweep_model.GridCellNetwork property) (canns.models.basic.theta_sweep_model.PlaceCellNetwork property) detect_file_type() (in module canns.data.datasets) dFdu (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] dilate_image() (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) dim (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] dimensionality (canns.task.navigation_base.BaseNavigationTask attribute) direction_cell_polar() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) DirectionCellNetwork (class in canns.models.basic.theta_sweep_model) display_animation_in_jupyter() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.jupyter_utils) display_name (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode attribute) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode attribute) (canns.pipeline.asa_gui.analysis_modes.batch_mode.BatchMode attribute) (canns.pipeline.asa_gui.analysis_modes.BatchMode attribute) (canns.pipeline.asa_gui.analysis_modes.cohomap_mode.CohoMapMode attribute) (canns.pipeline.asa_gui.analysis_modes.CohoMapMode attribute) (canns.pipeline.asa_gui.analysis_modes.cohospace_mode.CohoSpaceMode attribute) (canns.pipeline.asa_gui.analysis_modes.CohoSpaceMode attribute) (canns.pipeline.asa_gui.analysis_modes.decode_mode.DecodeMode attribute) (canns.pipeline.asa_gui.analysis_modes.DecodeMode attribute) (canns.pipeline.asa_gui.analysis_modes.fr_mode.FRMode attribute) (canns.pipeline.asa_gui.analysis_modes.frm_mode.FRMMode attribute) (canns.pipeline.asa_gui.analysis_modes.FRMMode attribute) (canns.pipeline.asa_gui.analysis_modes.FRMode attribute) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreInspectMode attribute) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode attribute) (canns.pipeline.asa_gui.analysis_modes.GridScoreInspectMode attribute) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode attribute) (canns.pipeline.asa_gui.analysis_modes.pathcompare_mode.PathCompareMode attribute) (canns.pipeline.asa_gui.analysis_modes.PathCompareMode attribute) (canns.pipeline.asa_gui.analysis_modes.tda_mode.TDAMode attribute) (canns.pipeline.asa_gui.analysis_modes.TDAMode attribute) dist() (canns.models.basic.cann.BaseCANN1D method) (canns.models.basic.cann.BaseCANN2D method) (canns.models.basic.hierarchical_model.BandCell method) (canns.models.basic.hierarchical_model.GaussRecUnits method) (canns.models.basic.hierarchical_model.GridCell method) (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (canns.models.basic.hierarchical_model.NonRecUnits method) dist_header (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) dist_viewer (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) distances (canns.task.GeodesicDistanceResult attribute) (canns.task.navigation_base.GeodesicDistanceResult attribute) do_compute_jacobians (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) do_decompose_jacobians (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) do_exclude_distance_outliers (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) do_rerun_q_outliers (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) do_shuffle (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] download_dataset() (in module canns.data) (in module canns.data.datasets) download_file_with_progress() (in module canns.data.datasets) dpi (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) dq (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] dragEnterEvent() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) dragLeaveEvent() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) draw_base_parallelogram() (in module canns.analyzer.data.asa.path) draw_torus_parallelogram_grid_scatter() (in module canns.analyzer.data.asa.cohospace_scatter) drift_strength (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) dropEvent() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) DropZone (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.drop_zone) dt (canns.analyzer.data.asa.config.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.asa.SpikeEmbeddingConfig attribute), [1] (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) (canns.task.navigation_base.BaseNavigationTask attribute) dtype (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] duration (canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) dx (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.hierarchical_model.BandCell attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.task.MovementCostGrid attribute) (canns.task.navigation_base.BaseNavigationTask attribute) (canns.task.navigation_base.MovementCostGrid attribute) dxy (canns.models.basic.hierarchical_model.GridCell attribute) dy (canns.task.MovementCostGrid attribute) (canns.task.navigation_base.MovementCostGrid attribute) E e (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) eigval_J_xstar (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] eigvec_J_xstar (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] elapsed_time (canns.pipeline.asa.runner.PipelineResult attribute) (canns.pipeline.asa_gui.core.PipelineResult attribute) (canns.pipeline.asa_gui.core.runner.PipelineResult attribute) (canns.pipeline.gallery.runner.GalleryResult attribute) ellipse (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] ellipse_theta_deg (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] embed_data (canns.pipeline.asa_gui.core.PipelineRunner property) (canns.pipeline.asa_gui.core.runner.PipelineRunner property) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) embed_spike_trains() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.embedding) emit_backend_warnings() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.backend) enable_blitting (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] encoding_speed (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) EncodingSpeed (in module canns.analyzer.visualization.core.writers) energy (canns.models.brain_inspired.AmariHopfieldNetwork property) (canns.models.brain_inspired.BrainInspiredModel property) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork property) (canns.models.brain_inspired.linear.LinearLayer property) (canns.models.brain_inspired.LinearLayer property) (canns.models.brain_inspired.spiking.SpikingLayer property) (canns.models.brain_inspired.SpikingLayer property) energy_landscape_1d_animation() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.energy_plots) energy_landscape_1d_static() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.energy_plots) energy_landscape_2d_animation() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.energy_plots) energy_landscape_2d_static() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.energy_plots) env (canns.task.navigation_base.BaseNavigationTask attribute) env_params (canns.task.navigation_base.BaseNavigationTask attribute) error (canns.pipeline.asa.runner.PipelineResult attribute) (canns.pipeline.asa_gui.core.AnalysisWorker attribute) (canns.pipeline.asa_gui.core.PipelineResult attribute) (canns.pipeline.asa_gui.core.runner.PipelineResult attribute) (canns.pipeline.asa_gui.core.worker.AnalysisWorker attribute) (canns.pipeline.gallery.runner.GalleryResult attribute) error_message (canns.pipeline.asa.screens.ErrorScreen attribute) error_title (canns.pipeline.asa.screens.ErrorScreen attribute) errors (canns.pipeline.asa_gui.models.job.JobResult attribute) (canns.pipeline.asa_gui.models.JobResult attribute) ErrorScreen (class in canns.pipeline.asa.screens) estimate_capacity() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) estimate_parallel_speedup() (in module canns.analyzer.visualization.core.rendering) F F_xstar (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] FFMPEG_AVAILABLE (in module canns.analyzer.visualization.core.writers) fig (canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (canns.analyzer.visualization.OptimizedAnimationBase attribute) figsize (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) fileDropped (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone attribute) (canns.pipeline.asa_gui.views.widgets.DropZone attribute) FileList (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.file_list) files_list (canns.pipeline.asa_gui.views.widgets.artifacts_tab.ArtifactsTab attribute) (canns.pipeline.asa_gui.views.widgets.ArtifactsTab attribute) final_q_threshold (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) finalize_analysis() (canns.pipeline.asa_gui.controllers.analysis_controller.AnalysisController method) (canns.pipeline.asa_gui.controllers.AnalysisController method) finalize_figure() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.config) finalize_preprocess() (canns.pipeline.asa_gui.controllers.preprocess_controller.PreprocessController method) (canns.pipeline.asa_gui.controllers.PreprocessController method) find_contours_at_level() (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) find_coords_matrix() (in module canns.analyzer.data.asa.path) find_fixed_points() (canns.analyzer.slow_points.finder.FixedPointFinder method) (canns.analyzer.slow_points.FixedPointFinder method) find_grid_spacing() (in module canns.analyzer.metrics.spatial_metrics) find_regional_maxima() (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) find_times_box() (in module canns.analyzer.data.asa.path) finish() (canns.analyzer.visualization.core.OptimizedAnimationWriter method) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter method) (canns.analyzer.visualization.OptimizedAnimationWriter method) finished (canns.pipeline.asa_gui.core.AnalysisWorker attribute) (canns.pipeline.asa_gui.core.worker.AnalysisWorker attribute) firing_field_heatmap() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) firing_rate_to_spike_train() (in module canns.analyzer.metrics.utils) fit_cohomap_stripes() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohomap) fit_ellipse() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.geometry) FittingError FixedPointFinder (class in canns.analyzer.slow_points) (class in canns.analyzer.slow_points.finder) FixedPoints (class in canns.analyzer.slow_points) (class in canns.analyzer.slow_points.fixed_points) for_animation() (canns.analyzer.visualization.core.config.PlotConfig class method) (canns.analyzer.visualization.core.PlotConfig class method) (canns.analyzer.visualization.PlotConfig class method) for_bump_animation() (canns.analyzer.data.asa.CANN1DPlotConfig class method) (canns.analyzer.data.asa.fly_roi.CANN1DPlotConfig class method) for_projection_3d() (canns.analyzer.data.asa.CANN2DPlotConfig class method) (canns.analyzer.data.asa.config.CANN2DPlotConfig class method) for_static_plot() (canns.analyzer.visualization.core.config.PlotConfig class method) (canns.analyzer.visualization.core.PlotConfig class method) (canns.analyzer.visualization.PlotConfig class method) for_torus_animation() (canns.analyzer.data.asa.CANN2DPlotConfig class method) (canns.analyzer.data.asa.config.CANN2DPlotConfig class method) format (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) format_duration() (in module canns.pipeline.asa_gui.utils.formatters) forward() (canns.models.brain_inspired.linear.LinearLayer method) (canns.models.brain_inspired.LinearLayer method) (canns.models.brain_inspired.spiking.SpikingLayer method) (canns.models.brain_inspired.SpikingLayer method) fps (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.PlotConfig attribute) fr_heatmap() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) frame_step (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) frames (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) frm (canns.analyzer.data.asa.fr.FRMResult attribute), [1] (canns.analyzer.data.asa.FRMResult attribute), [1] frm() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) FRMMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.frm_mode) FRMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.fr_mode) FRMResult (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.fr) G g (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) gain (canns.models.basic.hierarchical_model.BandCell attribute), [1] gallery_main() (in module canns.pipeline) GalleryApp (class in canns.pipeline) (class in canns.pipeline.gallery) (class in canns.pipeline.gallery.app) GalleryResult (class in canns.pipeline.gallery.runner) GalleryRunner (class in canns.pipeline.gallery.runner) GalleryState (class in canns.pipeline.gallery.state) gaussian_filter_2d() (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) GAUSSIAN_SIGMA_FACTOR (canns.analyzer.data.asa.config.Constants attribute) (canns.analyzer.data.asa.Constants attribute) gaussian_smooth_heatmaps() (in module canns.analyzer.metrics.spatial_metrics) GaussRecUnits (class in canns.models.basic.hierarchical_model) gc_bump (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] geodesic_result (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (canns.task.navigation_base.BaseNavigationTask attribute) GeodesicDistanceResult (class in canns.task) (class in canns.task.navigation_base) get_analysis_modes() (in module canns.pipeline.asa_gui.analysis_modes) get_analysis_options() (in module canns.pipeline.gallery.state) get_bump_center() (canns.models.basic.theta_sweep_model.DirectionCellNetwork static method) (canns.models.basic.theta_sweep_model.PlaceCellNetwork method) get_cell_index() (canns.task.MovementCostGrid method) (canns.task.navigation_base.MovementCostGrid method) get_center() (canns.models.basic.hierarchical_model.BandCell method) (canns.models.basic.hierarchical_model.GridCell method) get_data() (canns.task.closed_loop_navigation.ClosedLoopNavigationTask method) (canns.task.open_loop_navigation.OpenLoopNavigationTask method) get_data_dir() (in module canns.data) (in module canns.data.datasets) get_data_summary() (in module canns.data.loaders) get_dataset_path() (in module canns.data) (in module canns.data.datasets) get_default_analysis() (in module canns.pipeline.gallery.state) get_empty_trajectory() (canns.task.open_loop_navigation.OpenLoopNavigationTask method) get_example_output_dir() (in module canns.utils) (in module canns.utils.example_outputs) get_geodesic_index_by_pos() (canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (canns.task.navigation_base.BaseNavigationTask method) get_huggingface_upload_guide() (in module canns.data) (in module canns.data.datasets) get_imageio_writer_kwargs() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.backend) get_input() (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) get_left_right_data_session() (in module canns.data) (in module canns.data.datasets) get_left_right_npz() (in module canns.data) (in module canns.data.datasets) get_matplotlib_writer() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.writers) get_meta_params() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) get_multiprocessing_context() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.backend) get_optimal_worker_count() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.backend) get_preset_params() (in module canns.pipeline.asa.state) (in module canns.pipeline.asa_gui.models) (in module canns.pipeline.asa_gui.models.presets) get_recommended_format() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.writers) get_state() (canns.pipeline.asa_gui.controllers.analysis_controller.AnalysisController method) (canns.pipeline.asa_gui.controllers.AnalysisController method) get_statistics() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) get_stimulus_by_pos() (canns.models.basic.cann.BaseCANN method) (canns.models.basic.cann.BaseCANN1D method) (canns.models.basic.cann.BaseCANN2D method) (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.hierarchical_model.BandCell method) get_unique() (canns.analyzer.slow_points.fixed_points.FixedPoints method) (canns.analyzer.slow_points.FixedPoints method) get_unique_activity_bump() (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) gif_label (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) gif_view (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) grab_frame() (canns.analyzer.visualization.core.OptimizedAnimationWriter method) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter method) (canns.analyzer.visualization.OptimizedAnimationWriter method) grid (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) grid_autocorrelation() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) grid_cell (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] grid_cell_manifold_static() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) grid_cell_tracking_animation() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) GRID_DEFAULTS (in module canns.pipeline.gallery.app) grid_dx (canns.task.navigation_base.BaseNavigationTask attribute) grid_dy (canns.task.navigation_base.BaseNavigationTask attribute) grid_fr (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] grid_output (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] grid_score_plot() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) grid_spacing_plot() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) GridCell (class in canns.models.basic.hierarchical_model) GridCell2DPosition (class in canns.models.basic) (class in canns.models.basic.grid_cell) GridCell2DVelocity (class in canns.models.basic) (class in canns.models.basic.grid_cell) GridCellNetwork (class in canns.models.basic.theta_sweep_model) gridness_score (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] GridnessAnalyzer (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.grid_cells) GridnessResult (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.grid_cells) GridScoreInspectMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.gridscore_mode) GridScoreMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.gridscore_mode) GridScoreTab (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.gridscore_tab) H handle_periodic_condition() (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.GridCell2DVelocity method) (canns.models.basic.theta_sweep_model.DirectionCellNetwork static method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) has_decomposed_jacobians (canns.analyzer.slow_points.fixed_points.FixedPoints property) (canns.analyzer.slow_points.FixedPoints property) HAS_DOWNLOAD_DEPS (in module canns.data.datasets) HAS_NUMBA (in module canns.analyzer.data.asa.fly_roi) (in module canns.analyzer.data.asa.tda) HAS_NUMPY (in module canns.data.datasets) has_preprocessed_data() (canns.pipeline.asa.runner.PipelineRunner method) (canns.pipeline.asa_gui.core.PipelineRunner method) (canns.pipeline.asa_gui.core.runner.PipelineRunner method) has_scores() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) hd_angle (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) hd_tuning (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] HDCellResult (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.head_direction) head_direction_smoothing_timescale (canns.task.navigation_base.BaseNavigationTask attribute) HeadDirectionAnalyzer (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.core) (class in canns.analyzer.data.cell_classification.core.head_direction) header (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) heal_network() (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DVelocity method) HebbianTrainer (class in canns.trainer) (class in canns.trainer.hebbian) height (canns.task.navigation_base.BaseNavigationTask attribute) (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) HELP_TEXT (canns.pipeline.asa.screens.HelpScreen attribute) HelpDialog (class in canns.pipeline.asa_gui.views.widgets.help_dialog) HelpScreen (class in canns.pipeline.asa.screens) HierarchicalNetwork (class in canns.models.basic) (class in canns.models.basic.hierarchical_model) HierarchicalPathIntegrationModel (class in canns.models.basic.hierarchical_model) holes (canns.task.navigation_base.BaseNavigationTask attribute) HopfieldAnalyzer (class in canns.analyzer.model_specific.hopfield) HUGGINGFACE_REPO (in module canns.data) (in module canns.data.datasets) I identify_grid_modules_and_stats() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.core) (in module canns.analyzer.data.cell_classification.core.grid_modules_leiden) Iext_pair_type (in module canns.typing) Iext_type (in module canns.typing) image (in module canns.analyzer.data.cell_classification.utils.image_processing) image_path (canns.pipeline.asa.widgets.ImagePreview attribute) IMAGEIO (canns.analyzer.visualization.core.AnimationBackend attribute) (canns.analyzer.visualization.core.backend.AnimationBackend attribute) IMAGEIO_AVAILABLE (in module canns.analyzer.visualization.core.rendering) (in module canns.analyzer.visualization.core.writers) ImagePreview (class in canns.pipeline.asa.widgets) ImageTab (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.image_tab) ImageViewer (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.image_viewer) import_data() (canns.task.open_loop_navigation.OpenLoopNavigationTask method) init_func() (canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (canns.analyzer.visualization.core.OptimizedAnimationBase method) (canns.analyzer.visualization.OptimizedAnimationBase method) initial_head_direction (canns.task.navigation_base.BaseNavigationTask attribute) initialize_spike_buffer() (in module canns.trainer.utils) inp (canns.models.basic.cann.CANN1D attribute) (canns.models.basic.cann.CANN1D_SFA attribute) (canns.models.basic.cann.CANN2D attribute) (canns.models.basic.cann.CANN2D_SFA attribute) (canns.models.basic.CANN1D attribute) (canns.models.basic.CANN1D_SFA attribute) (canns.models.basic.CANN2D attribute) (canns.models.basic.CANN2D_SFA attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] input (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] input_bump() (canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (canns.models.basic.theta_sweep_model.PlaceCellNetwork method) input_mode (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) input_size (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) inputs (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] insp_header (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) inspectRequested (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) INT32_MAX (in module canns.task) integral (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) intermediates (canns.analyzer.data.cell_classification.BTNResult attribute) (canns.analyzer.data.cell_classification.core.btn.BTNResult attribute) (canns.analyzer.data.cell_classification.core.BTNResult attribute) internal_position_trajectory_static() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) interp_coords_to_full() (in module canns.analyzer.data.asa.path) interp_coords_to_full_1d() (in module canns.analyzer.data.asa.path) is_grid (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] is_hd (canns.analyzer.data.cell_classification.core.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.core.head_direction.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] is_jupyter_environment() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.jupyter_utils) is_running (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) is_running() (canns.pipeline.asa_gui.core.worker.WorkerManager method) (canns.pipeline.asa_gui.core.WorkerManager method) is_stable (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] is_turning (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) J J (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] J0 (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) J_xstar (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] jc (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) Jc() (canns.models.basic.hierarchical_model.GaussRecUnits method) JobResult (class in canns.pipeline.asa_gui.models) (class in canns.pipeline.asa_gui.models.job) JobSpec (class in canns.pipeline.asa_gui.models) (class in canns.pipeline.asa_gui.models.job) K k (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) kappa (canns.analyzer.data.asa.fly_roi.SiteBump attribute) kappa_mean (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) kwargs (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) L label_connected_components() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) labels (canns.analyzer.data.cell_classification.BTNResult attribute) (canns.analyzer.data.cell_classification.core.btn.BTNResult attribute) (canns.analyzer.data.cell_classification.core.BTNResult attribute) Lambda (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] lambda_net (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) launcher_main() (in module canns.pipeline) lbl_metrics (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) lbl_status (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) leak (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) learning_rate (canns.trainer.bcm.BCMTrainer attribute) (canns.trainer.BCMTrainer attribute) (canns.trainer.oja.OjaTrainer attribute) (canns.trainer.OjaTrainer attribute) (canns.trainer.sanger.SangerTrainer attribute) (canns.trainer.SangerTrainer attribute) (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) left (canns.models.basic.hierarchical_model.BandCell attribute), [1] LEFT_RIGHT_DATASET_DIR (in module canns.data.datasets) length (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.GridCell2DVelocity attribute) linear_speed_gains (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) LinearLayer (class in canns.models.brain_inspired) (class in canns.models.brain_inspired.linear) list_datasets() (in module canns.data) (in module canns.data.datasets) load() (canns.analyzer.data.cell_classification.io.MATFileLoader static method) (canns.analyzer.data.cell_classification.io.matlab_loader.MATFileLoader static method) (canns.analyzer.data.cell_classification.MATFileLoader static method) (in module canns.data) (in module canns.data.datasets) load_asa_npz() (in module canns.pipeline.asa_gui.utils.io_adapters) load_cached_result() (in module canns.pipeline.asa.state) load_checkpoint() (in module canns.analyzer.slow_points) (in module canns.analyzer.slow_points.checkpoint) load_example_cells() (canns.analyzer.data.cell_classification.io.MATFileLoader static method) (canns.analyzer.data.cell_classification.io.matlab_loader.MATFileLoader static method) (canns.analyzer.data.cell_classification.MATFileLoader static method) load_file() (in module canns.data.datasets) load_grid_data() (in module canns.data) (in module canns.data.loaders) load_gridscore_npz() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) load_left_right_npz() (in module canns.data) (in module canns.data.loaders) load_npz_any() (in module canns.analyzer.data.asa.path) load_roi_data() (in module canns.data) (in module canns.data.loaders) load_state() (canns.pipeline.asa_gui.views.pages.analysis_page.AnalysisPage method) (canns.pipeline.asa_gui.views.pages.AnalysisPage method) load_theme_qss() (in module canns.pipeline.asa_gui.resources) load_unit_data() (canns.analyzer.data.cell_classification.io.MATFileLoader static method) (canns.analyzer.data.cell_classification.io.matlab_loader.MATFileLoader static method) (canns.analyzer.data.cell_classification.MATFileLoader static method) loader (in module canns.analyzer.data.cell_classification.io.matlab_loader) log (canns.pipeline.asa_gui.core.AnalysisWorker attribute) (canns.pipeline.asa_gui.core.worker.AnalysisWorker attribute) log() (canns.pipeline.asa_gui.views.widgets.log_box.LogBox method) (canns.pipeline.asa_gui.views.widgets.LogBox method) log_lines (canns.pipeline.asa.widgets.LogViewer attribute) log_message() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) LogBox (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.log_box) logl (canns.analyzer.data.asa.fly_roi.SiteBump attribute) LogoLabel (class in canns.pipeline.asa_gui.main_window) LogViewer (class in canns.pipeline.asa.widgets) lr_cooldown (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) lr_factor (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) lr_init (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) lr_patience (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) M m (canns.models.basic.cann.CANN1D_SFA attribute) (canns.models.basic.cann.CANN2D_SFA attribute) (canns.models.basic.CANN1D_SFA attribute) (canns.models.basic.CANN2D_SFA attribute) (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] main() (in module canns.__main__) (in module canns.pipeline.asa) (in module canns.pipeline.asa_gui) (in module canns.pipeline.gallery) (in module canns.pipeline.launcher) MainWindow (class in canns.pipeline.asa_gui.main_window) make_candidate_centers() (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) make_conn() (canns.models.basic.cann.BaseCANN method) (canns.models.basic.cann.BaseCANN1D method) (canns.models.basic.cann.BaseCANN2D method) (canns.models.basic.hierarchical_model.BandCell method) (canns.models.basic.hierarchical_model.GaussRecUnits method) (canns.models.basic.hierarchical_model.GridCell method) (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) make_connection() (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.GridCell2DVelocity method) (canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) (canns.models.basic.theta_sweep_model.PlaceCellNetwork method) make_Wg2p() (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) map2pi() (in module canns.task.open_loop_navigation) mapping (canns.analyzer.data.cell_classification.BTNResult attribute) (canns.analyzer.data.cell_classification.core.btn.BTNResult attribute) (canns.analyzer.data.cell_classification.core.BTNResult attribute) mapping_ratio (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) margin (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) mark_idle() (canns.pipeline.asa_gui.controllers.analysis_controller.AnalysisController method) (canns.pipeline.asa_gui.controllers.AnalysisController method) (canns.pipeline.asa_gui.controllers.preprocess_controller.PreprocessController method) (canns.pipeline.asa_gui.controllers.PreprocessController method) MATFileLoader (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.io) (class in canns.analyzer.data.cell_classification.io.matlab_loader) MATPLOTLIB (canns.analyzer.visualization.core.AnimationBackend attribute) (canns.analyzer.visualization.core.backend.AnimationBackend attribute) max_height_value (canns.analyzer.data.asa.CANN1DPlotConfig attribute) (canns.analyzer.data.asa.fly_roi.CANN1DPlotConfig attribute) max_iters (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) MAX_KERNEL_SIZE (canns.analyzer.data.asa.fly_roi.Constants attribute) max_n_unique (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) max_width_range (canns.analyzer.data.asa.CANN1DPlotConfig attribute) (canns.analyzer.data.asa.fly_roi.CANN1DPlotConfig attribute) maxdim (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] maxt (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) md5_file() (in module canns.pipeline.asa_gui.core.cache) MEC_model_list (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] metadata (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] method (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) metric (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) min_center_radius (canns.analyzer.data.cell_classification.core.grid_cells.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.core.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.GridnessAnalyzer attribute) MIN_HEIGHT (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) min_orientation (canns.analyzer.data.cell_classification.core.grid_cells.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.core.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.GridnessAnalyzer attribute) min_speed (canns.analyzer.data.asa.config.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.asa.SpikeEmbeddingConfig attribute), [1] MIN_WIDTH (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) mode (canns.pipeline.asa_gui.models.AnalysisConfig attribute) (canns.pipeline.asa_gui.models.config.AnalysisConfig attribute) (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) model (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer attribute) (canns.pipeline.gallery.state.GalleryState attribute) (canns.trainer.Trainer attribute) MODEL_ANALYSIS_OPTIONS (in module canns.pipeline.gallery.state) ModePicker (class in canns.pipeline.launcher) module canns canns.__main__ canns.analyzer canns.analyzer.data canns.analyzer.data.asa canns.analyzer.data.asa.coho canns.analyzer.data.asa.cohomap canns.analyzer.data.asa.cohomap_vectors canns.analyzer.data.asa.cohospace canns.analyzer.data.asa.cohospace_phase_centers canns.analyzer.data.asa.cohospace_scatter canns.analyzer.data.asa.config canns.analyzer.data.asa.decode canns.analyzer.data.asa.embedding canns.analyzer.data.asa.fly_roi canns.analyzer.data.asa.fr canns.analyzer.data.asa.path canns.analyzer.data.asa.plotting canns.analyzer.data.asa.tda canns.analyzer.data.asa.utils canns.analyzer.data.cell_classification canns.analyzer.data.cell_classification.core canns.analyzer.data.cell_classification.core.btn canns.analyzer.data.cell_classification.core.grid_cells canns.analyzer.data.cell_classification.core.grid_modules_leiden canns.analyzer.data.cell_classification.core.head_direction canns.analyzer.data.cell_classification.core.spatial_analysis canns.analyzer.data.cell_classification.io canns.analyzer.data.cell_classification.io.matlab_loader canns.analyzer.data.cell_classification.utils canns.analyzer.data.cell_classification.utils.circular_stats canns.analyzer.data.cell_classification.utils.correlation canns.analyzer.data.cell_classification.utils.geometry canns.analyzer.data.cell_classification.utils.image_processing canns.analyzer.data.cell_classification.visualization canns.analyzer.data.cell_classification.visualization.btn_plots canns.analyzer.data.cell_classification.visualization.grid_plots canns.analyzer.data.cell_classification.visualization.hd_plots canns.analyzer.metrics canns.analyzer.metrics.spatial_metrics canns.analyzer.metrics.systematic_ratemap canns.analyzer.metrics.utils canns.analyzer.model_specific canns.analyzer.model_specific.hopfield canns.analyzer.slow_points canns.analyzer.slow_points.checkpoint canns.analyzer.slow_points.finder canns.analyzer.slow_points.fixed_points canns.analyzer.slow_points.visualization canns.analyzer.visualization canns.analyzer.visualization.core canns.analyzer.visualization.core.animation canns.analyzer.visualization.core.backend canns.analyzer.visualization.core.config canns.analyzer.visualization.core.jupyter_utils canns.analyzer.visualization.core.rendering canns.analyzer.visualization.core.writers canns.analyzer.visualization.energy_plots canns.analyzer.visualization.spatial_plots canns.analyzer.visualization.spike_plots canns.analyzer.visualization.theta_sweep_plots canns.analyzer.visualization.tuning_plots canns.data canns.data.datasets canns.data.loaders canns.models canns.models.basic canns.models.basic.cann canns.models.basic.grid_cell canns.models.basic.hierarchical_model canns.models.basic.theta_sweep_model canns.models.brain_inspired canns.models.brain_inspired.hopfield canns.models.brain_inspired.linear canns.models.brain_inspired.spiking canns.models.hybrid canns.pipeline canns.pipeline.__main__ canns.pipeline.asa canns.pipeline.asa.__main__ canns.pipeline.asa.app canns.pipeline.asa.runner canns.pipeline.asa.screens canns.pipeline.asa.state canns.pipeline.asa.widgets canns.pipeline.asa_gui canns.pipeline.asa_gui.__main__ canns.pipeline.asa_gui.analysis_modes canns.pipeline.asa_gui.analysis_modes.base canns.pipeline.asa_gui.analysis_modes.batch_mode canns.pipeline.asa_gui.analysis_modes.cohomap_mode canns.pipeline.asa_gui.analysis_modes.cohospace_mode canns.pipeline.asa_gui.analysis_modes.decode_mode canns.pipeline.asa_gui.analysis_modes.fr_mode canns.pipeline.asa_gui.analysis_modes.frm_mode canns.pipeline.asa_gui.analysis_modes.gridscore_mode canns.pipeline.asa_gui.analysis_modes.pathcompare_mode canns.pipeline.asa_gui.analysis_modes.tda_mode canns.pipeline.asa_gui.app canns.pipeline.asa_gui.controllers canns.pipeline.asa_gui.controllers.analysis_controller canns.pipeline.asa_gui.controllers.preprocess_controller canns.pipeline.asa_gui.core canns.pipeline.asa_gui.core.cache canns.pipeline.asa_gui.core.runner canns.pipeline.asa_gui.core.state canns.pipeline.asa_gui.core.worker canns.pipeline.asa_gui.main_window canns.pipeline.asa_gui.models canns.pipeline.asa_gui.models.config canns.pipeline.asa_gui.models.job canns.pipeline.asa_gui.models.presets canns.pipeline.asa_gui.resources canns.pipeline.asa_gui.utils canns.pipeline.asa_gui.utils.formatters canns.pipeline.asa_gui.utils.io_adapters canns.pipeline.asa_gui.utils.validators canns.pipeline.asa_gui.views canns.pipeline.asa_gui.views.help_content canns.pipeline.asa_gui.views.pages canns.pipeline.asa_gui.views.pages.analysis_page canns.pipeline.asa_gui.views.pages.preprocess_page canns.pipeline.asa_gui.views.panels canns.pipeline.asa_gui.views.widgets canns.pipeline.asa_gui.views.widgets.artifacts_tab canns.pipeline.asa_gui.views.widgets.drop_zone canns.pipeline.asa_gui.views.widgets.file_list canns.pipeline.asa_gui.views.widgets.gridscore_tab canns.pipeline.asa_gui.views.widgets.help_dialog canns.pipeline.asa_gui.views.widgets.image_tab canns.pipeline.asa_gui.views.widgets.image_viewer canns.pipeline.asa_gui.views.widgets.log_box canns.pipeline.asa_gui.views.widgets.pathcompare_tab canns.pipeline.asa_gui.views.widgets.popup_combo canns.pipeline.gallery canns.pipeline.gallery.__main__ canns.pipeline.gallery.app canns.pipeline.gallery.runner canns.pipeline.gallery.state canns.pipeline.launcher canns.task canns.task.closed_loop_navigation canns.task.navigation_base canns.task.open_loop_navigation canns.task.tracking canns.trainer canns.trainer.bcm canns.trainer.hebbian canns.trainer.oja canns.trainer.sanger canns.trainer.stdp canns.trainer.utils canns.typing canns.utils canns.utils.benchmark canns.utils.example_outputs mouseDoubleClickEvent() (canns.pipeline.asa_gui.views.widgets.image_viewer.ImageViewer method) (canns.pipeline.asa_gui.views.widgets.ImageViewer method) mousePressEvent() (canns.pipeline.asa_gui.main_window.LogoLabel method) move_heading() (canns.models.basic.hierarchical_model.BandCell method) movement_direction (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) MovementCostGrid (class in canns.task) (class in canns.task.navigation_base) MULTIPROCESSING_CORES (canns.analyzer.data.asa.config.Constants attribute) (canns.analyzer.data.asa.Constants attribute) mvl (canns.analyzer.data.cell_classification.io.matlab_loader.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.io.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.TuningCurve attribute), [1] (in module canns.analyzer.data.cell_classification.utils.circular_stats) mvl_hd (canns.analyzer.data.cell_classification.core.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.core.head_direction.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.HDCellResult attribute), [1] mvl_hd_threshold (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer attribute) mvl_theta (canns.analyzer.data.cell_classification.core.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.core.head_direction.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.HDCellResult attribute), [1] mvl_theta_threshold (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer attribute) N n_bins (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer attribute) n_bump_max (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) n_clusters (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.BTNResult attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNResult attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNResult attribute) n_frames (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) n_iters (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] n_iters_per_print_update (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) n_points (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] n_roi (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) n_steps (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) name (canns.pipeline.asa_gui.analysis_modes.AbstractAnalysisMode attribute) (canns.pipeline.asa_gui.analysis_modes.base.AbstractAnalysisMode attribute) (canns.pipeline.asa_gui.analysis_modes.batch_mode.BatchMode attribute) (canns.pipeline.asa_gui.analysis_modes.BatchMode attribute) (canns.pipeline.asa_gui.analysis_modes.cohomap_mode.CohoMapMode attribute) (canns.pipeline.asa_gui.analysis_modes.CohoMapMode attribute) (canns.pipeline.asa_gui.analysis_modes.cohospace_mode.CohoSpaceMode attribute) (canns.pipeline.asa_gui.analysis_modes.CohoSpaceMode attribute) (canns.pipeline.asa_gui.analysis_modes.decode_mode.DecodeMode attribute) (canns.pipeline.asa_gui.analysis_modes.DecodeMode attribute) (canns.pipeline.asa_gui.analysis_modes.fr_mode.FRMode attribute) (canns.pipeline.asa_gui.analysis_modes.frm_mode.FRMMode attribute) (canns.pipeline.asa_gui.analysis_modes.FRMMode attribute) (canns.pipeline.asa_gui.analysis_modes.FRMode attribute) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreInspectMode attribute) (canns.pipeline.asa_gui.analysis_modes.gridscore_mode.GridScoreMode attribute) (canns.pipeline.asa_gui.analysis_modes.GridScoreInspectMode attribute) (canns.pipeline.asa_gui.analysis_modes.GridScoreMode attribute) (canns.pipeline.asa_gui.analysis_modes.pathcompare_mode.PathCompareMode attribute) (canns.pipeline.asa_gui.analysis_modes.PathCompareMode attribute) (canns.pipeline.asa_gui.analysis_modes.tda_mode.TDAMode attribute) (canns.pipeline.asa_gui.analysis_modes.TDAMode attribute) nbs (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) nbump (canns.analyzer.data.asa.fly_roi.SiteBump attribute) neuron_file (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) neuron_id (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) nframes (canns.analyzer.data.asa.CANN1DPlotConfig attribute) (canns.analyzer.data.asa.fly_roi.CANN1DPlotConfig attribute) noise_0 (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] noise_strength (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) NonRecUnits (class in canns.models.basic.hierarchical_model) normalize_by_patterns (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) normalize_firing_rates() (in module canns.analyzer.metrics.utils) normalize_weight_rows() (in module canns.trainer.utils) normalize_weights (canns.trainer.oja.OjaTrainer attribute) (canns.trainer.OjaTrainer attribute) (canns.trainer.sanger.SangerTrainer attribute) (canns.trainer.SangerTrainer attribute) normalized_xcorr2() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.correlation) npoints (canns.analyzer.data.asa.CANN1DPlotConfig attribute) (canns.analyzer.data.asa.fly_roi.CANN1DPlotConfig attribute) npoints_multiplier (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] num (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] num_dc (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) num_gc_1side (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) num_gridness_radii (canns.analyzer.data.cell_classification.core.grid_cells.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.core.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.GridnessAnalyzer attribute) num_module (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] num_neurons (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) num_place (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) (canns.models.basic.HierarchicalNetwork attribute), [1] num_shuffles (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] num_times (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] num_workers (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.ParallelAnimationRenderer attribute) (canns.analyzer.visualization.core.rendering.ParallelAnimationRenderer attribute) (canns.analyzer.visualization.ParallelAnimationRenderer attribute) numangsint (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) NUMBA_THRESHOLD (canns.analyzer.data.asa.fly_roi.Constants attribute) O objects (canns.task.navigation_base.BaseNavigationTask attribute) occupancy (canns.analyzer.data.asa.fr.FRMResult attribute), [1] (canns.analyzer.data.asa.FRMResult attribute), [1] OjaTrainer (class in canns.trainer) (class in canns.trainer.oja) ok (canns.pipeline.asa_gui.models.job.JobResult attribute) (canns.pipeline.asa_gui.models.JobResult attribute) on_button_pressed() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.asa.screens.ErrorScreen method) (canns.pipeline.asa.screens.HelpScreen method) (canns.pipeline.asa.screens.TerminalSizeWarning method) (canns.pipeline.asa.screens.WorkdirScreen method) (canns.pipeline.asa.widgets.ImagePreview method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) (canns.pipeline.launcher.ModePicker method) on_checkbox_changed() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) on_directory_tree_file_selected() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) on_key() (canns.pipeline.asa.screens.HelpScreen method) (canns.pipeline.asa.screens.TerminalSizeWarning method) on_mount() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) on_resize() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.asa.widgets.ImagePreview method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) on_select_changed() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) on_workdir_selected() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) on_worker_state_changed() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) OpenLoopNavigationData (class in canns.task.open_loop_navigation) OpenLoopNavigationTask (class in canns.task.open_loop_navigation) optimal_radius (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] optimize_colormap() (in module canns.analyzer.visualization.core.animation) OptimizedAnimationBase (class in canns.analyzer.visualization) (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.animation) OptimizedAnimationWriter (class in canns.analyzer.visualization) (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.writers) orientation (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] out_dir (canns.pipeline.asa_gui.models.job.JobResult attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobResult attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) outlier_distance_scale (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) outlier_q_scale (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) output_size (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) P pack_neuron_traj_to_asa() (in module canns.pipeline.asa_gui.utils.io_adapters) ParallelAnimationRenderer (class in canns.analyzer.visualization) (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.rendering) ParamGroup (class in canns.pipeline.asa.widgets) params (canns.pipeline.asa_gui.models.AnalysisConfig attribute) (canns.pipeline.asa_gui.models.config.AnalysisConfig attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) parse_times_box_to_indices() (in module canns.analyzer.data.asa.path) path() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) path_compare_1d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) path_compare_2d() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) PathCompareMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.pathcompare_mode) PathCompareTab (class in canns.pipeline.asa_gui.views.widgets) (class in canns.pipeline.asa_gui.views.widgets.pathcompare_tab) pattern_energies (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer property) peak_locations (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] peak_rate (canns.analyzer.data.cell_classification.io.matlab_loader.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.io.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.TuningCurve attribute), [1] pearson_correlation() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.correlation) penbump (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) phase_offset (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) phase_shift (canns.models.basic.hierarchical_model.BandCell attribute) PipelineResult (class in canns.pipeline.asa.runner) (class in canns.pipeline.asa_gui.core) (class in canns.pipeline.asa_gui.core.runner) PipelineRunner (class in canns.pipeline.asa.runner) (class in canns.pipeline.asa_gui.core) (class in canns.pipeline.asa_gui.core.runner) place_center (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] place_fr (canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (canns.models.basic.HierarchicalNetwork attribute), [1] PlaceCellNetwork (class in canns.models.basic.theta_sweep_model) plot_2d_bump_on_manifold() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_3d_bump_on_torus() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_autocorrelation() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spatial_plots) plot_autocorrelogram() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.grid_plots) plot_btn_autocorr_summary() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.btn_plots) plot_btn_distance_matrix() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.btn_plots) plot_cohomap() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohomap) plot_cohomap_scatter() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_cohomap_scatter_multi() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_cohomap_stripes() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohomap_vectors) plot_cohomap_vectors() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohomap_vectors) plot_cohospace() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace) plot_cohospace_phase_centers() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_phase_centers) plot_cohospace_scatter_neuron_1d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_neuron_2d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_neuron_skewed() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_population_1d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_population_2d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_population_skewed() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_trajectory_1d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_scatter_trajectory_2d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace_scatter) plot_cohospace_skewed() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.cohospace) plot_direction_cell_polar() (in module canns.analyzer.visualization.theta_sweep_plots) plot_firing_field_heatmap() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spatial_plots) plot_fixed_points_2d() (in module canns.analyzer.slow_points) (in module canns.analyzer.slow_points.visualization) plot_fixed_points_3d() (in module canns.analyzer.slow_points) (in module canns.analyzer.slow_points.visualization) plot_frm() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.fr) plot_grid_cell_manifold() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.theta_sweep_plots) plot_grid_score() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spatial_plots) plot_grid_score_histogram() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.grid_plots) plot_grid_spacing_analysis() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spatial_plots) plot_gridness_analysis() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.grid_plots) plot_hd_analysis() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.hd_plots) plot_internal_position_trajectory() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.theta_sweep_plots) plot_path_compare_1d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_path_compare_2d() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_polar_tuning() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.hd_plots) plot_population_activity_with_theta() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.theta_sweep_plots) plot_projection() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.plotting) plot_rate_map() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.grid_plots) plot_temporal_autocorr() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.visualization) (in module canns.analyzer.data.cell_classification.visualization.hd_plots) PlotConfig (class in canns.analyzer.visualization) (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.config) PlotConfigs (class in canns.analyzer.visualization) (class in canns.analyzer.visualization.core) (class in canns.analyzer.visualization.core.config) png_label (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) png_view (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) pol2cart() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.geometry) polyarea() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.geometry) population_activity_heatmap() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spike_plots) PopulationCoding1D (class in canns.task.tracking) PopulationCoding2D (class in canns.task.tracking) PopupComboBox (class in canns.pipeline.asa_gui.views.widgets.popup_combo) pos (canns.analyzer.data.asa.fly_roi.SiteBump attribute) pos_tuning (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] position (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) position2phase() (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) positions (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] Postophase() (canns.models.basic.hierarchical_model.BandCell method) (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) preclass (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) preclass_params (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) predict() (canns.models.brain_inspired.BrainInspiredModel method) (canns.trainer.bcm.BCMTrainer method) (canns.trainer.BCMTrainer method) (canns.trainer.hebbian.HebbianTrainer method) (canns.trainer.HebbianTrainer method) (canns.trainer.oja.OjaTrainer method) (canns.trainer.OjaTrainer method) (canns.trainer.sanger.SangerTrainer method) (canns.trainer.SangerTrainer method) (canns.trainer.stdp.STDPTrainer method) (canns.trainer.STDPTrainer method) (canns.trainer.Trainer method) predict_batch() (canns.trainer.hebbian.HebbianTrainer method) (canns.trainer.HebbianTrainer method) (canns.trainer.Trainer method) predict_state_attr (canns.models.brain_inspired.BrainInspiredModel property) (canns.models.brain_inspired.linear.LinearLayer property) (canns.models.brain_inspired.LinearLayer property) (canns.models.brain_inspired.spiking.SpikingLayer property) (canns.models.brain_inspired.SpikingLayer property) prefer_generic (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) prefer_generic_predict (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) preferred_direction (canns.analyzer.data.cell_classification.core.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.core.head_direction.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.HDCellResult attribute), [1] preprocess_completed (canns.pipeline.asa_gui.views.pages.preprocess_page.PreprocessPage attribute) (canns.pipeline.asa_gui.views.pages.PreprocessPage attribute) preprocess_help_markdown() (in module canns.pipeline.asa_gui.views.help_content) preprocess_method (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) preprocess_params (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) preprocess_spike_data() (in module canns.data.loaders) PreprocessController (class in canns.pipeline.asa_gui.controllers) (class in canns.pipeline.asa_gui.controllers.preprocess_controller) PreprocessPage (class in canns.pipeline.asa_gui.views.pages) (class in canns.pipeline.asa_gui.views.pages.preprocess_page) preserve_on_resize (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) preset (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) print_summary() (canns.analyzer.slow_points.fixed_points.FixedPoints method) (canns.analyzer.slow_points.FixedPoints method) ProcessingError, [1], [2], [3], [4] progress (canns.pipeline.asa_gui.core.AnalysisWorker attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.worker.AnalysisWorker attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) progress_bar (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] (canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) proj_k (canns.models.basic.hierarchical_model.BandCell attribute), [1] proj_k_x (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) proj_k_y (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) push_history() (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) Q qstar (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] quality (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] quick_setup() (in module canns.data) (in module canns.data.datasets) R r (canns.models.basic.cann.CANN1D attribute) (canns.models.basic.cann.CANN1D_SFA attribute) (canns.models.basic.cann.CANN2D attribute) (canns.models.basic.cann.CANN2D_SFA attribute) (canns.models.basic.CANN1D attribute) (canns.models.basic.CANN1D_SFA attribute) (canns.models.basic.CANN2D attribute) (canns.models.basic.CANN2D_SFA attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] r1 (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) r2 (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) random_seed (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) raster_plot() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.spike_plots) rasterized (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) RasterScanNavigationTask (class in canns.task.open_loop_navigation) rates (canns.analyzer.data.cell_classification.io.matlab_loader.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.io.TuningCurve attribute), [1] (canns.analyzer.data.cell_classification.TuningCurve attribute), [1] ratio (canns.models.basic.hierarchical_model.GridCell attribute) rayleigh_p (canns.analyzer.data.cell_classification.core.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.core.head_direction.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.HDCellResult attribute), [1] reason (canns.analyzer.visualization.core.backend.BackendSelection attribute) (canns.analyzer.visualization.core.BackendSelection attribute) RECOMMENDED_HEIGHT (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) RECOMMENDED_WIDTH (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) redo() (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) regionprops() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) relative_path() (in module canns.pipeline.asa.state) (in module canns.pipeline.asa_gui.core.state) render() (canns.analyzer.visualization.core.ParallelAnimationRenderer method) (canns.analyzer.visualization.core.rendering.ParallelAnimationRenderer method) (canns.analyzer.visualization.ParallelAnimationRenderer method) render_animation() (canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (canns.analyzer.visualization.core.OptimizedAnimationBase method) (canns.analyzer.visualization.OptimizedAnimationBase method) render_animation_parallel() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.rendering) render_backend (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) render_start_method (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) render_workers (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) repeat (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) request_cancel() (canns.pipeline.asa_gui.core.AnalysisWorker method) (canns.pipeline.asa_gui.core.worker.AnalysisWorker method) (canns.pipeline.asa_gui.core.worker.WorkerManager method) (canns.pipeline.asa_gui.core.WorkerManager method) res (canns.analyzer.data.asa.config.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.asa.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) reset() (canns.models.basic.hierarchical_model.BandCell method) (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) (canns.task.open_loop_navigation.OpenLoopNavigationTask method) reset_input() (canns.pipeline.asa.runner.PipelineRunner method) (canns.pipeline.asa_gui.core.PipelineRunner method) (canns.pipeline.asa_gui.core.runner.PipelineRunner method) reset_state() (canns.models.basic.hierarchical_model.GridCell method) (canns.models.brain_inspired.spiking.SpikingLayer method) (canns.models.brain_inspired.SpikingLayer method) resize() (canns.models.brain_inspired.AmariHopfieldNetwork method) (canns.models.brain_inspired.BrainInspiredModel method) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) (canns.models.brain_inspired.linear.LinearLayer method) (canns.models.brain_inspired.LinearLayer method) resizeEvent() (canns.pipeline.asa_gui.views.widgets.image_viewer.ImageViewer method) (canns.pipeline.asa_gui.views.widgets.ImageViewer method) resolve_path() (in module canns.pipeline.asa.state) (in module canns.pipeline.asa_gui.core.state) resolve_time_slice() (in module canns.analyzer.data.asa.path) resource_path() (in module canns.pipeline.asa_gui.resources) results_dir() (canns.pipeline.asa.runner.PipelineRunner method) (canns.pipeline.asa_gui.core.PipelineRunner method) (canns.pipeline.asa_gui.core.runner.PipelineRunner method) rho (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.hierarchical_model.BandCell attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] right (canns.models.basic.hierarchical_model.BandCell attribute), [1] rng (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) rng_seed (canns.task.navigation_base.BaseNavigationTask attribute) rnn_model (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) roi_bump_fits() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.fly_roi) rot (canns.models.basic.hierarchical_model.GridCell attribute) rot_vel (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) rotate_image() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.image_processing) rotational_velocity_coherence_time (canns.task.navigation_base.BaseNavigationTask attribute) rotational_velocity_std (canns.task.navigation_base.BaseNavigationTask attribute) run() (canns.pipeline.asa_gui.core.AnalysisWorker method) (canns.pipeline.asa_gui.core.worker.AnalysisWorker method) (canns.pipeline.gallery.runner.GalleryRunner method) run_analysis() (canns.pipeline.asa.runner.PipelineRunner method) (canns.pipeline.asa_gui.controllers.analysis_controller.AnalysisController method) (canns.pipeline.asa_gui.controllers.AnalysisController method) (canns.pipeline.asa_gui.core.PipelineRunner method) (canns.pipeline.asa_gui.core.runner.PipelineRunner method) run_preprocess() (canns.pipeline.asa_gui.controllers.preprocess_controller.PreprocessController method) (canns.pipeline.asa_gui.controllers.PreprocessController method) run_preprocessing() (canns.pipeline.asa.runner.PipelineRunner method) (canns.pipeline.asa_gui.core.PipelineRunner method) (canns.pipeline.asa_gui.core.runner.PipelineRunner method) run_steps (canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) runner (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) S s (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) SangerTrainer (class in canns.trainer) (class in canns.trainer.sanger) save_bbox_inches (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) save_checkpoint() (in module canns.analyzer.slow_points) (in module canns.analyzer.slow_points.checkpoint) save_dpi (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) save_format (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) save_fr_heatmap_png() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.fr) save_path (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.PlotConfig attribute) savefig_kwargs (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) scale (canns.task.navigation_base.BaseNavigationTask attribute) score (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] select_animation_backend() (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.backend) set_animation() (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab method) (canns.pipeline.asa_gui.views.widgets.PathCompareTab method) set_animation_progress() (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab method) (canns.pipeline.asa_gui.views.widgets.PathCompareTab method) set_artifacts() (canns.pipeline.asa_gui.views.widgets.artifacts_tab.ArtifactsTab method) (canns.pipeline.asa_gui.views.widgets.ArtifactsTab method) (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab method) (canns.pipeline.asa_gui.views.widgets.PathCompareTab method) set_autocorr_image() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) set_distribution_image() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) set_empty_text() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) set_enabled() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) set_grid_resolution() (canns.task.navigation_base.BaseNavigationTask method) set_hint() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) set_image() (canns.pipeline.asa_gui.views.widgets.image_tab.ImageTab method) (canns.pipeline.asa_gui.views.widgets.image_viewer.ImageViewer method) (canns.pipeline.asa_gui.views.widgets.ImageTab method) (canns.pipeline.asa_gui.views.widgets.ImageViewer method) set_path() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) set_patterns() (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) set_run_status() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) set_status() (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab method) (canns.pipeline.asa_gui.views.widgets.GridScoreTab method) set_title() (canns.pipeline.asa_gui.views.widgets.drop_zone.DropZone method) (canns.pipeline.asa_gui.views.widgets.DropZone method) setup() (canns.analyzer.visualization.core.OptimizedAnimationWriter method) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter method) (canns.analyzer.visualization.OptimizedAnimationWriter method) (canns.pipeline.asa_gui.core.AnalysisWorker method) (canns.pipeline.asa_gui.core.worker.AnalysisWorker method) shape (canns.task.MovementCostGrid property) (canns.task.navigation_base.MovementCostGrid property) should_use_parallel() (in module canns.analyzer.visualization.core.rendering) show (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) show_conn() (canns.models.basic.cann.BaseCANN2D method) show_data() (canns.task.navigation_base.BaseNavigationTask method) show_geodesic_distance_matrix() (canns.task.navigation_base.BaseNavigationTask method) show_help_dialog() (in module canns.pipeline.asa_gui.views.widgets.help_dialog) show_iteration_progress (canns.trainer.Trainer attribute) show_legend (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) show_progress_bar (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) show_trajectory_analysis() (canns.task.open_loop_navigation.OpenLoopNavigationTask method) showPopup() (canns.pipeline.asa_gui.views.widgets.popup_combo.PopupComboBox method) sig2 (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) sigma (canns.analyzer.data.asa.config.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.asa.SpikeEmbeddingConfig attribute), [1] sigma_diff (canns.analyzer.data.asa.BumpFitsConfig attribute) (canns.analyzer.data.asa.fly_roi.BumpFitsConfig attribute) SiteBump (class in canns.analyzer.data.asa.fly_roi) size (canns.models.basic.hierarchical_model.BandCell attribute), [1] (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] skew_transform() (in module canns.analyzer.data.asa.path) smooth (canns.analyzer.data.asa.config.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.asa.SpikeEmbeddingConfig attribute), [1] smooth_sigma (canns.analyzer.data.cell_classification.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.btn.BTNConfig attribute) (canns.analyzer.data.cell_classification.core.BTNConfig attribute) SmoothTracking1D (class in canns.task.tracking) SmoothTracking2D (class in canns.task.tracking) snake_wrap_trail_in_parallelogram() (in module canns.analyzer.data.asa.path) sort_combo (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) spacing (canns.analyzer.data.cell_classification.core.grid_cells.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.core.GridnessResult attribute), [1] (canns.analyzer.data.cell_classification.GridnessResult attribute), [1] (canns.models.basic.hierarchical_model.BandCell attribute), [1] speed (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) speed_coherence_time (canns.task.navigation_base.BaseNavigationTask attribute) SPEED_CONVERSION_FACTOR (canns.analyzer.data.asa.config.Constants attribute) (canns.analyzer.data.asa.Constants attribute) speed_filter (canns.analyzer.data.asa.config.SpikeEmbeddingConfig attribute), [1] (canns.analyzer.data.asa.SpikeEmbeddingConfig attribute), [1] speed_mean (canns.task.navigation_base.BaseNavigationTask attribute) speed_std (canns.task.navigation_base.BaseNavigationTask attribute) spike (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) spike_indices (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] spike_sum (canns.analyzer.data.asa.fr.FRMResult attribute), [1] (canns.analyzer.data.asa.FRMResult attribute), [1] spike_times (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] spike_train_to_firing_rate() (in module canns.analyzer.metrics.utils) SpikeEmbeddingConfig (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.config) SpikingLayer (class in canns.models.brain_inspired) (class in canns.models.brain_inspired.spiking) splitter (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) squared_distance() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.geometry) standardize (canns.analyzer.data.asa.config.TDAConfig attribute), [1] (canns.analyzer.data.asa.TDAConfig attribute), [1] start() (canns.pipeline.asa_gui.core.worker.WorkerManager method) (canns.pipeline.asa_gui.core.WorkerManager method) start_pos (canns.task.navigation_base.BaseNavigationTask attribute) state (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) (canns.pipeline.asa_gui.core.state.StateManager property) (canns.pipeline.asa_gui.core.StateManager property) (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) state_attr (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) state_changed (canns.pipeline.asa_gui.core.state.StateManager attribute) (canns.pipeline.asa_gui.core.StateManager attribute) state_replaced (canns.pipeline.asa_gui.core.state.StateManager attribute) (canns.pipeline.asa_gui.core.StateManager attribute) StateAwareRasterScanPolicy (class in canns.task.open_loop_navigation) StateManager (class in canns.pipeline.asa_gui.core) (class in canns.pipeline.asa_gui.core.state) stdp_kernel() (in module canns.trainer.utils) stdp_kernel_vec (in module canns.trainer.utils) STDPTrainer (class in canns.trainer) (class in canns.trainer.stdp) step_by_pos() (canns.task.closed_loop_navigation.ClosedLoopNavigationTask method) step_size (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) storage_capacity (canns.models.brain_inspired.AmariHopfieldNetwork property) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork property) stored_patterns (canns.analyzer.model_specific.hopfield.HopfieldAnalyzer attribute) strict_mode (canns.analyzer.data.cell_classification.core.head_direction.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.core.HeadDirectionAnalyzer attribute) (canns.analyzer.data.cell_classification.HeadDirectionAnalyzer attribute) subtract_mean (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) success (canns.pipeline.asa.runner.PipelineResult attribute) (canns.pipeline.asa_gui.core.PipelineResult attribute) (canns.pipeline.asa_gui.core.runner.PipelineResult attribute) (canns.pipeline.gallery.runner.GalleryResult attribute) summary (canns.pipeline.asa.runner.PipelineResult attribute) (canns.pipeline.asa_gui.core.PipelineResult attribute) (canns.pipeline.asa_gui.core.runner.PipelineResult attribute) (canns.pipeline.asa_gui.models.job.JobResult attribute) (canns.pipeline.asa_gui.models.JobResult attribute) (canns.pipeline.gallery.runner.GalleryResult attribute) super_verbose (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) supports_blitting() (in module canns.analyzer.visualization.core.animation) supports_parallel (canns.analyzer.visualization.core.backend.BackendSelection attribute) (canns.analyzer.visualization.core.BackendSelection attribute) synapses() (canns.models.basic.hierarchical_model.BandCell method) T t (in module canns.analyzer.data.cell_classification.utils.geometry) tau (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.GridCell2DVelocity attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) tau_v (canns.models.basic.cann.CANN1D_SFA attribute) (canns.models.basic.cann.CANN2D_SFA attribute) (canns.models.basic.CANN1D_SFA attribute) (canns.models.basic.CANN2D_SFA attribute) (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) tda_vis() (in module canns.analyzer.data.asa) (in module canns.analyzer.data.asa.tda) TDAConfig (class in canns.analyzer.data.asa) (class in canns.analyzer.data.asa.config) TDAMode (class in canns.pipeline.asa_gui.analysis_modes) (class in canns.pipeline.asa_gui.analysis_modes.tda_mode) temperature (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) TemplateMatching1D (class in canns.task.tracking) TemplateMatching2D (class in canns.task.tracking) TerminalSizeWarning (class in canns.pipeline.asa.screens) theta_population_activity_static() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) theta_sweep_animation() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) theta_sweep_place_cell_animation() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) theta_tuning (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] thigmotaxis (canns.task.navigation_base.BaseNavigationTask attribute) threshold (canns.analyzer.data.cell_classification.core.grid_cells.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.core.GridnessAnalyzer attribute) (canns.analyzer.data.cell_classification.GridnessAnalyzer attribute) (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) threshold_tau (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) tile_parallelogram_points_scatter() (in module canns.analyzer.data.asa.cohospace_scatter) TIME_CONVERSION_FACTOR (canns.analyzer.data.asa.config.Constants attribute) (canns.analyzer.data.asa.Constants attribute) time_stamps (in module canns.analyzer.data.cell_classification.core.head_direction) (in module canns.analyzer.data.cell_classification.core.spatial_analysis) time_steps_per_second (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) time_type (in module canns.typing) title (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) TITLE (canns.pipeline.asa.app.ASAApp attribute) (canns.pipeline.asa.ASAApp attribute) title (canns.pipeline.asa.widgets.ParamGroup attribute) (canns.pipeline.asa_gui.views.widgets.gridscore_tab.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.GridScoreTab attribute) (canns.pipeline.asa_gui.views.widgets.pathcompare_tab.PathCompareTab attribute) (canns.pipeline.asa_gui.views.widgets.PathCompareTab attribute) TITLE (canns.pipeline.ASAApp attribute) (canns.pipeline.gallery.app.GalleryApp attribute) (canns.pipeline.gallery.GalleryApp attribute) (canns.pipeline.GalleryApp attribute) (canns.pipeline.launcher.ModePicker attribute) TMazeClosedLoopNavigationTask (class in canns.task.closed_loop_navigation) TMazeOpenLoopNavigationTask (class in canns.task.open_loop_navigation) TMazeRecessClosedLoopNavigationTask (class in canns.task.closed_loop_navigation) TMazeRecessOpenLoopNavigationTask (class in canns.task.open_loop_navigation) to_matplotlib_kwargs() (canns.analyzer.visualization.core.config.PlotConfig method) (canns.analyzer.visualization.core.PlotConfig method) (canns.analyzer.visualization.PlotConfig method) to_savefig_kwargs() (canns.analyzer.visualization.core.config.PlotConfig method) (canns.analyzer.visualization.core.PlotConfig method) (canns.analyzer.visualization.PlotConfig method) tol_dq (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) tol_q (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) tol_unique (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPoints attribute), [1] Tomato (in module canns.analyzer.data.cell_classification.core.btn) total_steps (canns.task.closed_loop_navigation.ClosedLoopNavigationTask attribute) (canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) trace_decay (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) trace_post (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) trace_pre (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) track_blob_centers() (canns.models.basic.grid_cell.GridCell2DVelocity static method) (canns.models.basic.GridCell2DVelocity static method) train() (canns.trainer.bcm.BCMTrainer method) (canns.trainer.BCMTrainer method) (canns.trainer.hebbian.HebbianTrainer method) (canns.trainer.HebbianTrainer method) (canns.trainer.oja.OjaTrainer method) (canns.trainer.OjaTrainer method) (canns.trainer.sanger.SangerTrainer method) (canns.trainer.SangerTrainer method) (canns.trainer.stdp.STDPTrainer method) (canns.trainer.STDPTrainer method) (canns.trainer.Trainer method) Trainer (class in canns.trainer) traj_file (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.asa_gui.models.job.JobSpec attribute) (canns.pipeline.asa_gui.models.JobSpec attribute) tuning_curve (canns.analyzer.data.cell_classification.core.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.core.head_direction.HDCellResult attribute), [1] (canns.analyzer.data.cell_classification.HDCellResult attribute), [1] tuning_curve() (canns.analyzer.visualization.core.config.PlotConfigs static method) (canns.analyzer.visualization.core.PlotConfigs static method) (canns.analyzer.visualization.PlotConfigs static method) (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.tuning_plots) TuningCurve (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.io) (class in canns.analyzer.data.cell_classification.io.matlab_loader) turn_steps_remaining (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) U u (canns.models.basic.cann.CANN1D attribute) (canns.models.basic.cann.CANN1D_SFA attribute) (canns.models.basic.cann.CANN2D attribute) (canns.models.basic.cann.CANN2D_SFA attribute) (canns.models.basic.CANN1D attribute) (canns.models.basic.CANN1D_SFA attribute) (canns.models.basic.CANN2D attribute) (canns.models.basic.CANN2D_SFA attribute) (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] undo() (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) Unit (class in canns.analyzer.data.cell_classification) (class in canns.analyzer.data.cell_classification.io) (class in canns.analyzer.data.cell_classification.io.matlab_loader) unit_id (canns.analyzer.data.cell_classification.io.matlab_loader.Unit attribute), [1] (canns.analyzer.data.cell_classification.io.Unit attribute), [1] (canns.analyzer.data.cell_classification.Unit attribute), [1] unwrap_container() (in module canns.analyzer.data.asa.path) update() (canns.models.basic.cann.CANN1D method) (canns.models.basic.cann.CANN1D_SFA method) (canns.models.basic.cann.CANN2D method) (canns.models.basic.cann.CANN2D_SFA method) (canns.models.basic.CANN1D method) (canns.models.basic.CANN1D_SFA method) (canns.models.basic.CANN2D method) (canns.models.basic.CANN2D_SFA method) (canns.models.basic.grid_cell.GridCell2DPosition method) (canns.models.basic.grid_cell.GridCell2DVelocity method) (canns.models.basic.GridCell2DPosition method) (canns.models.basic.GridCell2DVelocity method) (canns.models.basic.hierarchical_model.BandCell method) (canns.models.basic.hierarchical_model.GaussRecUnits method) (canns.models.basic.hierarchical_model.GridCell method) (canns.models.basic.hierarchical_model.HierarchicalNetwork method) (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (canns.models.basic.hierarchical_model.NonRecUnits method) (canns.models.basic.HierarchicalNetwork method) (canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (canns.models.basic.theta_sweep_model.GridCellNetwork method) (canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (canns.models.brain_inspired.AmariHopfieldNetwork method) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) (canns.models.brain_inspired.linear.LinearLayer method) (canns.models.brain_inspired.LinearLayer method) (canns.models.brain_inspired.spiking.SpikingLayer method) (canns.models.brain_inspired.SpikingLayer method) (canns.pipeline.asa_gui.core.state.StateManager method) (canns.pipeline.asa_gui.core.StateManager method) update_analysis() (canns.pipeline.asa_gui.controllers.analysis_controller.AnalysisController method) (canns.pipeline.asa_gui.controllers.AnalysisController method) update_analysis_params_visibility() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) update_cohospace_controls() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) update_decode_controls() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) update_frame() (canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (canns.analyzer.visualization.core.OptimizedAnimationBase method) (canns.analyzer.visualization.OptimizedAnimationBase method) update_image() (canns.pipeline.asa.widgets.ImagePreview method) update_inputs() (canns.pipeline.asa_gui.controllers.preprocess_controller.PreprocessController method) (canns.pipeline.asa_gui.controllers.PreprocessController method) update_pathcompare_controls() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) update_progress() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) update_spike_buffer() (in module canns.trainer.utils) update_threshold() (canns.models.brain_inspired.linear.LinearLayer method) (canns.models.brain_inspired.LinearLayer method) update_workdir_label() (canns.pipeline.asa.app.ASAApp method) (canns.pipeline.asa.ASAApp method) (canns.pipeline.ASAApp method) (canns.pipeline.gallery.app.GalleryApp method) (canns.pipeline.gallery.GalleryApp method) (canns.pipeline.GalleryApp method) use_bcm_threshold (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) use_parallel (canns.analyzer.visualization.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.AnimationConfig attribute), [1] (canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] use_sparse (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) V v (canns.models.basic.cann.CANN1D_SFA attribute) (canns.models.basic.cann.CANN2D_SFA attribute) (canns.models.basic.CANN1D_SFA attribute) (canns.models.basic.CANN2D_SFA attribute) (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) v_reset (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) validate_asa_npz() (in module canns.pipeline.asa_gui.utils.validators) validate_files() (in module canns.pipeline.asa.state) (in module canns.pipeline.asa_gui.core.state) validate_grid_data() (in module canns.data.loaders) validate_neuron_traj() (in module canns.pipeline.asa_gui.utils.validators) validate_preprocessing() (in module canns.pipeline.asa_gui.core.state) validate_roi_data() (in module canns.data.loaders) value_bump (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) value_grid (canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (canns.models.basic.GridCell2DPosition attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute), [1] (canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] vec_pref (canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (canns.models.basic.GridCell2DVelocity attribute), [1] velocity (canns.task.open_loop_navigation.OpenLoopNavigationData attribute) verbose (canns.analyzer.slow_points.finder.FixedPointFinder attribute) (canns.analyzer.slow_points.FixedPointFinder attribute) (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) version_info (in module canns) VideoFormat (in module canns.analyzer.visualization.core.writers) viewer (canns.pipeline.asa_gui.views.widgets.image_tab.ImageTab attribute) (canns.pipeline.asa_gui.views.widgets.ImageTab attribute) W W (canns.models.brain_inspired.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) W_a (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) W_beta (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) W_gamma (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) W_l (canns.models.basic.grid_cell.GridCell2DVelocity attribute) (canns.models.basic.GridCell2DVelocity attribute) w_L2S (canns.models.basic.hierarchical_model.BandCell attribute), [1] w_max (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) w_min (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) w_S2L (canns.models.basic.hierarchical_model.BandCell attribute), [1] wait() (canns.pipeline.asa_gui.core.worker.WorkerManager method) (canns.pipeline.asa_gui.core.WorkerManager method) wall_repel_distance (canns.task.navigation_base.BaseNavigationTask attribute) wall_repel_strength (canns.task.navigation_base.BaseNavigationTask attribute) walls (canns.task.navigation_base.BaseNavigationTask attribute) warn_double_rendering() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.writers) warn_gif_format() (in module canns.analyzer.visualization) (in module canns.analyzer.visualization.core) (in module canns.analyzer.visualization.core.writers) warnings (canns.analyzer.visualization.core.backend.BackendSelection attribute) (canns.analyzer.visualization.core.BackendSelection attribute) weight_attr (canns.models.brain_inspired.BrainInspiredModel property) (canns.models.brain_inspired.linear.LinearLayer property) (canns.models.brain_inspired.LinearLayer property) (canns.models.brain_inspired.spiking.SpikingLayer property) (canns.models.brain_inspired.SpikingLayer property) (canns.trainer.bcm.BCMTrainer attribute) (canns.trainer.BCMTrainer attribute) (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) (canns.trainer.oja.OjaTrainer attribute) (canns.trainer.OjaTrainer attribute) (canns.trainer.sanger.SangerTrainer attribute) (canns.trainer.SangerTrainer attribute) (canns.trainer.stdp.STDPTrainer attribute) (canns.trainer.STDPTrainer attribute) Wg2p (canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) wheelEvent() (canns.pipeline.asa_gui.views.widgets.image_viewer.ImageViewer method) (canns.pipeline.asa_gui.views.widgets.ImageViewer method) width (canns.task.navigation_base.BaseNavigationTask attribute) (canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) window_size (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute) workdir (canns.pipeline.asa.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.state.WorkflowState attribute) (canns.pipeline.asa_gui.core.WorkflowState attribute) (canns.pipeline.gallery.state.GalleryState attribute) WorkdirScreen (class in canns.pipeline.asa.screens) WorkerManager (class in canns.pipeline.asa_gui.core) (class in canns.pipeline.asa_gui.core.worker) WorkflowState (class in canns.pipeline.asa.state) (class in canns.pipeline.asa_gui.core) (class in canns.pipeline.asa_gui.core.state) wrap_to_pi() (in module canns.analyzer.data.cell_classification) (in module canns.analyzer.data.cell_classification.utils) (in module canns.analyzer.data.cell_classification.utils.geometry) writer (canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (canns.analyzer.visualization.OptimizedAnimationWriter attribute) X x (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.hierarchical_model.BandCell attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) (canns.models.brain_inspired.spiking.SpikingLayer attribute) (canns.models.brain_inspired.SpikingLayer attribute) (in module canns.analyzer.data.cell_classification.core.grid_cells) (in module canns.analyzer.data.cell_classification.utils.correlation) x_centers (canns.task.MovementCostGrid property) (canns.task.navigation_base.MovementCostGrid property) x_edges (canns.analyzer.data.asa.fr.FRMResult attribute) (canns.analyzer.data.asa.FRMResult attribute) (canns.task.MovementCostGrid attribute) (canns.task.navigation_base.MovementCostGrid attribute) x_grid (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) x_init (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] x_range (canns.models.basic.hierarchical_model.GridCell attribute) xlabel (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) xstar (canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (canns.analyzer.slow_points.FixedPoints attribute), [1] Y y (canns.models.brain_inspired.linear.LinearLayer attribute) (canns.models.brain_inspired.LinearLayer attribute) y_centers (canns.task.MovementCostGrid property) (canns.task.navigation_base.MovementCostGrid property) y_edges (canns.analyzer.data.asa.fr.FRMResult attribute) (canns.analyzer.data.asa.FRMResult attribute) (canns.task.MovementCostGrid attribute) (canns.task.navigation_base.MovementCostGrid attribute) y_grid (canns.models.basic.grid_cell.GridCell2DPosition attribute) (canns.models.basic.GridCell2DPosition attribute) (canns.models.basic.hierarchical_model.GridCell attribute) (canns.models.basic.theta_sweep_model.GridCellNetwork attribute) ylabel (canns.analyzer.visualization.core.config.PlotConfig attribute) (canns.analyzer.visualization.core.PlotConfig attribute) (canns.analyzer.visualization.PlotConfig attribute) Z z_max (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.hierarchical_model.BandCell attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) z_min (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.hierarchical_model.BandCell attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) z_range (canns.models.basic.cann.BaseCANN1D attribute) (canns.models.basic.cann.BaseCANN2D attribute) (canns.models.basic.hierarchical_model.BandCell attribute) (canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) zero_diagonal (canns.trainer.hebbian.HebbianTrainer attribute) (canns.trainer.HebbianTrainer attribute) zlabel (canns.analyzer.data.asa.CANN2DPlotConfig attribute) (canns.analyzer.data.asa.config.CANN2DPlotConfig attribute)