Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __getitem__() (src.canns.analyzer.slow_points.fixed_points.FixedPoints method) (src.canns.analyzer.slow_points.FixedPoints method) __len__() (src.canns.analyzer.slow_points.fixed_points.FixedPoints method) (src.canns.analyzer.slow_points.FixedPoints method) __post_init__() (src.canns.analyzer.visualization.AnimationConfig method) (src.canns.analyzer.visualization.core.AnimationConfig method) (src.canns.analyzer.visualization.core.config.AnimationConfig method) (src.canns.analyzer.visualization.core.config.PlotConfig method) (src.canns.analyzer.visualization.core.PlotConfig method) (src.canns.analyzer.visualization.PlotConfig method) __version__ (in module src.canns) A A (src.canns.models.basic.cann.BaseCANN1D attribute) a (src.canns.models.basic.cann.BaseCANN1D attribute) A (src.canns.models.basic.cann.BaseCANN2D attribute) a (src.canns.models.basic.cann.BaseCANN2D attribute) A (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) a (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) A (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DPosition attribute) a (src.canns.models.basic.GridCell2DPosition attribute) A (src.canns.models.basic.GridCell2DVelocity attribute) a (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] A (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] a (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] A (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) a (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) A (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) a (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) A (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) a (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) A_minus (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) A_plus (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) accessible_indices (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.task.GeodesicDistanceResult attribute) (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.GeodesicDistanceResult attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) accessible_mask (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) action_policy (src.canns.task.open_loop_navigation.CustomOpenLoopNavigationTask attribute) ActionPolicy (class in src.canns.task.open_loop_navigation) activate() (src.canns.models.basic.hierarchical_model.NonRecUnits method) activation (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) active_times (src.canns.analyzer.data.cann2d.TDAConfig attribute) adaptation_strength (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) after_duration (src.canns.task.tracking.PopulationCoding1D attribute) (src.canns.task.tracking.PopulationCoding2D attribute) agent (src.canns.task.navigation_base.BaseNavigationTask attribute) agent_params (src.canns.task.navigation_base.BaseNavigationTask attribute) alpha (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) AmariHopfieldNetwork (class in src.canns.models.brain_inspired) (class in src.canns.models.brain_inspired.hopfield) ampli (src.canns.analyzer.data.cann1d.SiteBump attribute) ampli_min (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) analyze_recall() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) ang_speed_gains (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) ang_velocity (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) angle (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] AnimationConfig (class in src.canns.analyzer.data.cann1d) (class in src.canns.analyzer.visualization) (class in src.canns.analyzer.visualization.core) (class in src.canns.analyzer.visualization.core.config) AnimationError AntiHebbianTrainer (class in src.canns.trainer) (class in src.canns.trainer.hebbian) apply_hebbian_learning() (src.canns.models.brain_inspired.BrainInspiredModel method) artists (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.OptimizedAnimationBase attribute) aspect (src.canns.task.navigation_base.BaseNavigationTask attribute) asyn (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) auto_parallel_threshold (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] average_firing_rate_plot() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spike_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) ax (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.OptimizedAnimationBase attribute) B band_cell_x (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cell_y (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cell_z (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cells (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] band_x_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] band_y_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] BandCell (class in src.canns.models.basic.hierarchical_model) BASE_RADIUS (src.canns.analyzer.data.cann1d.Constants attribute) BASE_URL (in module src.canns.data.datasets) BaseCANN (class in src.canns.models.basic.cann) BaseCANN1D (class in src.canns.models.basic.cann) BaseCANN2D (class in src.canns.models.basic.cann) BaseNavigationTask (class in src.canns.task.navigation_base) batch_process_trajectories() (in module src.canns.pipeline) (in module src.canns.pipeline.theta_sweep) BCMTrainer (class in src.canns.trainer) (class in src.canns.trainer.bcm) before_duration (src.canns.task.tracking.PopulationCoding1D attribute) (src.canns.task.tracking.PopulationCoding2D attribute) benchmark() (in module src.canns.utils) (in module src.canns.utils.benchmark) beta (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) bitrate (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) boundary (src.canns.task.navigation_base.BaseNavigationTask attribute) boundary_conditions (src.canns.task.navigation_base.BaseNavigationTask attribute) BrainInspiredModel (class in src.canns.models.brain_inspired) BrainInspiredModelGroup (class in src.canns.models.brain_inspired) build_movement_cost_grid() (src.canns.task.navigation_base.BaseNavigationTask method) bump_fits() (in module src.canns.analyzer.data.cann1d) bump_selection (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.data.cann1d.CANN1DPlotConfig attribute) BumpFitsConfig (class in src.canns.analyzer.data.cann1d) C calculate_dist() (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) calculate_input_from_conjgc() (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) calculate_theta_modulation() (in module src.canns.models.basic.theta_sweep_model) calculate_theta_sweep_data() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) candidate_centers (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] CANN1D (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN1D_SFA (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN1DError CANN1DPlotConfig (class in src.canns.analyzer.data.cann1d) CANN2D (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN2D_SFA (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN2DError CANN2DPlotConfig (class in src.canns.analyzer.data.cann2d) cell_num (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] center (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] center_ideal (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] center_phase (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] center_position (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] centerI (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) circle_period() (src.canns.models.basic.hierarchical_model.GridCell method) clabel (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) clone() (src.canns.analyzer.data.cann1d.SiteBump method) ClosedLoopNavigationTask (class in src.canns.task.closed_loop_navigation) codec (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) coeff (src.canns.analyzer.data.cann2d.TDAConfig attribute) color (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) compiled (src.canns.trainer.bcm.BCMTrainer attribute) (src.canns.trainer.BCMTrainer attribute) (src.canns.trainer.oja.OjaTrainer attribute) (src.canns.trainer.OjaTrainer attribute) (src.canns.trainer.sanger.SangerTrainer attribute) (src.canns.trainer.SangerTrainer attribute) (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) compiled_prediction (src.canns.trainer.Trainer attribute) compute_action() (src.canns.task.open_loop_navigation.ActionPolicy method) (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy method) compute_energy() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) compute_file_hash() (in module src.canns.data.datasets) compute_firing_field() (in module src.canns.analyzer.metrics.spatial_metrics) compute_geodesic_distance_matrix() (src.canns.task.navigation_base.BaseNavigationTask method) compute_grid_score() (in module src.canns.analyzer.metrics.spatial_metrics) compute_overlap() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) compute_pattern_energies() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) compute_running_average() (in module src.canns.trainer.utils) compute_spatial_autocorrelation() (in module src.canns.analyzer.metrics.spatial_metrics) compute_systematic_ratemap() (in module src.canns.analyzer.metrics.systematic_ratemap) compute_velocity_input() (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DVelocity method) compute_weight_symmetry_error() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) cond_id (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] config (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.OptimizedAnimationBase attribute) configure_progress() (src.canns.trainer.Trainer method) conj_input (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) conn_mat (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] conn_noise (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) Constants (class in src.canns.analyzer.data.cann1d) (class in src.canns.analyzer.data.cann2d) coor_transform (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] coor_transform_inv (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) cost_grid (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.task.GeodesicDistanceResult attribute) (src.canns.task.navigation_base.BaseNavigationTask attribute) (src.canns.task.navigation_base.GeodesicDistanceResult attribute) costs (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) create_1d_bump_animation() (in module src.canns.analyzer.data.cann1d) create_artists() (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (src.canns.analyzer.visualization.core.OptimizedAnimationBase method) (src.canns.analyzer.visualization.OptimizedAnimationBase method) create_buffer() (in module src.canns.analyzer.visualization.core.animation) create_grid_cell_tracking_animation() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spatial_plots) create_optimized_writer() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.writers) create_theta_sweep_grid_cell_animation() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.theta_sweep_plots) create_theta_sweep_place_cell_animation() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.theta_sweep_plots) current_direction (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) CustomOpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) D D (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] data (in module src.canns.analyzer.data.cann1d) (in module src.canns.analyzer.data.cann2d) DataLoadError DATASETS (in module src.canns.data) (in module src.canns.data.datasets) decode() (src.canns.models.basic.hierarchical_model.GaussRecUnits method) decode_circular_coordinates() (in module src.canns.analyzer.data.cann2d) decode_position_from_activity() (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DVelocity method) decode_position_lsq() (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DVelocity method) decoded_pos (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] decompose_jacobians() (src.canns.analyzer.slow_points.fixed_points.FixedPoints method) (src.canns.analyzer.slow_points.FixedPoints method) DEFAULT_DATA_DIR (in module src.canns.data) (in module src.canns.data.datasets) DEFAULT_DPI (src.canns.analyzer.data.cann1d.Constants attribute) (src.canns.analyzer.data.cann2d.Constants attribute) DEFAULT_FIGSIZE (src.canns.analyzer.data.cann1d.Constants attribute) (src.canns.analyzer.data.cann2d.Constants attribute) derivative (src.canns.models.basic.hierarchical_model.GridCell property) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork property) (src.canns.models.basic.theta_sweep_model.GridCellNetwork property) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork property) detect_file_type() (in module src.canns.data.datasets) dFdu (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] dim (src.canns.analyzer.data.cann2d.TDAConfig attribute) dimensionality (src.canns.task.navigation_base.BaseNavigationTask attribute) direction_cell_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) direction_cell_polar() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) direction_network (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) DirectionCellNetwork (class in src.canns.models.basic.theta_sweep_model) display_animation_in_jupyter() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.jupyter_utils) dist() (src.canns.models.basic.cann.BaseCANN1D method) (src.canns.models.basic.cann.BaseCANN2D method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (src.canns.models.basic.hierarchical_model.NonRecUnits method) distances (src.canns.task.GeodesicDistanceResult attribute) (src.canns.task.navigation_base.GeodesicDistanceResult attribute) do_compute_jacobians (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) do_decompose_jacobians (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) do_exclude_distance_outliers (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) do_rerun_q_outliers (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) do_shuffle (src.canns.analyzer.data.cann2d.TDAConfig attribute) download_dataset() (in module src.canns.data) (in module src.canns.data.datasets) download_file_with_progress() (in module src.canns.data.datasets) dpi (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) dq (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] drift_strength (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) dt (src.canns.analyzer.data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) (src.canns.task.navigation_base.BaseNavigationTask attribute) dtype (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] duration (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) dx (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.BaseNavigationTask attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) dxy (src.canns.models.basic.hierarchical_model.GridCell attribute) dy (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) E e (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) eigval_J_xstar (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] eigvec_J_xstar (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] embed_spike_trains() (in module src.canns.analyzer.data.cann2d) enable_blitting (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] encoding_speed (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) EncodingSpeed (in module src.canns.analyzer.visualization.core.writers) energy (src.canns.models.brain_inspired.AmariHopfieldNetwork property) (src.canns.models.brain_inspired.BrainInspiredModel property) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork property) (src.canns.models.brain_inspired.linear.LinearLayer property) (src.canns.models.brain_inspired.LinearLayer property) (src.canns.models.brain_inspired.spiking.SpikingLayer property) (src.canns.models.brain_inspired.SpikingLayer property) energy_landscape_1d_animation() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.energy_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) energy_landscape_1d_static() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.energy_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) energy_landscape_2d_animation() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.energy_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) energy_landscape_2d_static() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.energy_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) env (src.canns.task.navigation_base.BaseNavigationTask attribute) env_params (src.canns.task.navigation_base.BaseNavigationTask attribute) env_size (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) estimate_capacity() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) estimate_parallel_speedup() (in module src.canns.analyzer.visualization.core.rendering) F F_xstar (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] FFMPEG_AVAILABLE (in module src.canns.analyzer.visualization.core.writers) fig (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationBase attribute) (src.canns.analyzer.visualization.OptimizedAnimationBase attribute) figsize (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) final_q_threshold (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) finalize_figure() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.config) find_fixed_points() (src.canns.analyzer.slow_points.finder.FixedPointFinder method) (src.canns.analyzer.slow_points.FixedPointFinder method) find_grid_spacing() (in module src.canns.analyzer.metrics.spatial_metrics) finish() (src.canns.analyzer.visualization.core.OptimizedAnimationWriter method) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter method) (src.canns.analyzer.visualization.OptimizedAnimationWriter method) firing_field_heatmap() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) firing_rate_to_spike_train() (in module src.canns.analyzer.metrics.utils) FittingError FixedPointFinder (class in src.canns.analyzer.slow_points) (class in src.canns.analyzer.slow_points.finder) FixedPoints (class in src.canns.analyzer.slow_points) (class in src.canns.analyzer.slow_points.fixed_points) for_animation() (src.canns.analyzer.visualization.core.config.PlotConfig class method) (src.canns.analyzer.visualization.core.PlotConfig class method) (src.canns.analyzer.visualization.PlotConfig class method) for_bump_animation() (src.canns.analyzer.data.cann1d.CANN1DPlotConfig class method) for_projection_3d() (src.canns.analyzer.data.cann2d.CANN2DPlotConfig class method) for_static_plot() (src.canns.analyzer.visualization.core.config.PlotConfig class method) (src.canns.analyzer.visualization.core.PlotConfig class method) (src.canns.analyzer.visualization.PlotConfig class method) for_torus_animation() (src.canns.analyzer.data.cann2d.CANN2DPlotConfig class method) format (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) forward() (src.canns.models.brain_inspired.linear.LinearLayer method) (src.canns.models.brain_inspired.LinearLayer method) (src.canns.models.brain_inspired.spiking.SpikingLayer method) (src.canns.models.brain_inspired.SpikingLayer method) fps (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.PlotConfig attribute) frame_step (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) frames (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) G g (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) gain (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] GAUSSIAN_SIGMA_FACTOR (src.canns.analyzer.data.cann2d.Constants attribute) gaussian_smooth_heatmaps() (in module src.canns.analyzer.metrics.spatial_metrics) GaussRecUnits (class in src.canns.models.basic.hierarchical_model) gc_bump (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] geodesic_result (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.task.navigation_base.BaseNavigationTask attribute) GeodesicDistanceResult (class in src.canns.task) (class in src.canns.task.navigation_base) get_bump_center() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork static method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) get_cell_index() (src.canns.task.MovementCostGrid method) (src.canns.task.navigation_base.MovementCostGrid method) get_center() (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GridCell method) get_data() (src.canns.task.closed_loop_navigation.ClosedLoopNavigationTask method) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) get_data_dir() (in module src.canns.data) (in module src.canns.data.datasets) get_data_summary() (in module src.canns.data.loaders) get_dataset_path() (in module src.canns.data) (in module src.canns.data.datasets) get_empty_trajectory() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) get_geodesic_index_by_pos() (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (src.canns.task.navigation_base.BaseNavigationTask method) get_huggingface_upload_guide() (in module src.canns.data) (in module src.canns.data.datasets) get_input() (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) get_matplotlib_writer() (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.writers) get_recommended_format() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.writers) get_results() (src.canns.pipeline.Pipeline method) get_statistics() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) get_stimulus_by_pos() (src.canns.models.basic.cann.BaseCANN method) (src.canns.models.basic.cann.BaseCANN1D method) (src.canns.models.basic.cann.BaseCANN2D method) (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.hierarchical_model.BandCell method) get_unique() (src.canns.analyzer.slow_points.fixed_points.FixedPoints method) (src.canns.analyzer.slow_points.FixedPoints method) get_unique_activity_bump() (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) grab_frame() (src.canns.analyzer.visualization.core.OptimizedAnimationWriter method) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter method) (src.canns.analyzer.visualization.OptimizedAnimationWriter method) grid (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) grid_autocorrelation() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) grid_cell (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] grid_cell_manifold_static() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) grid_cell_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) grid_cell_tracking_animation() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) grid_dx (src.canns.task.navigation_base.BaseNavigationTask attribute) grid_dy (src.canns.task.navigation_base.BaseNavigationTask attribute) grid_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] grid_network (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) grid_output (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] grid_score_plot() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) grid_spacing_plot() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) GridCell (class in src.canns.models.basic.hierarchical_model) GridCell2DPosition (class in src.canns.models.basic) (class in src.canns.models.basic.grid_cell) GridCell2DVelocity (class in src.canns.models.basic) (class in src.canns.models.basic.grid_cell) GridCellNetwork (class in src.canns.models.basic.theta_sweep_model) H handle_periodic_condition() (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.GridCell2DVelocity method) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork static method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) has_decomposed_jacobians (src.canns.analyzer.slow_points.fixed_points.FixedPoints property) (src.canns.analyzer.slow_points.FixedPoints property) HAS_DOWNLOAD_DEPS (in module src.canns.data.datasets) HAS_NUMBA (in module src.canns.analyzer.data.cann1d) (in module src.canns.analyzer.data.cann2d) HAS_NUMPY (in module src.canns.data.datasets) has_results() (src.canns.pipeline.Pipeline method) hd_angle (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) head_direction_smoothing_timescale (src.canns.task.navigation_base.BaseNavigationTask attribute) heal_network() (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DVelocity method) HebbianTrainer (class in src.canns.trainer) (class in src.canns.trainer.hebbian) height (src.canns.task.navigation_base.BaseNavigationTask attribute) (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) HierarchicalNetwork (class in src.canns.models.basic) (class in src.canns.models.basic.hierarchical_model) HierarchicalPathIntegrationModel (class in src.canns.models.basic.hierarchical_model) holes (src.canns.task.navigation_base.BaseNavigationTask attribute) HopfieldAnalyzer (class in src.canns.analyzer.model_specific.hopfield) HUGGINGFACE_REPO (in module src.canns.data) (in module src.canns.data.datasets) I Iext_pair_type (in module src.canns.typing) Iext_type (in module src.canns.typing) IMAGEIO_AVAILABLE (in module src.canns.analyzer.visualization.core.rendering) (in module src.canns.analyzer.visualization.core.writers) import_data() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) init_func() (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (src.canns.analyzer.visualization.core.OptimizedAnimationBase method) (src.canns.analyzer.visualization.OptimizedAnimationBase method) initial_head_direction (src.canns.task.navigation_base.BaseNavigationTask attribute) initialize_spike_buffer() (in module src.canns.trainer.utils) inp (src.canns.models.basic.cann.CANN1D attribute) (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] input (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] input_bump() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) input_size (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) inputs (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] INT32_MAX (in module src.canns.task) integral (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) is_jupyter_environment() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.jupyter_utils) is_stable (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] is_turning (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) J J (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] J0 (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) J_xstar (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] jc (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) Jc() (src.canns.models.basic.hierarchical_model.GaussRecUnits method) K k (src.canns.analyzer.data.cann2d.TDAConfig attribute) (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) kappa (src.canns.analyzer.data.cann1d.SiteBump attribute) kappa_mean (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) kwargs (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) L Lambda (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] lambda_net (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) leak (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) learning_rate (src.canns.trainer.bcm.BCMTrainer attribute) (src.canns.trainer.BCMTrainer attribute) (src.canns.trainer.oja.OjaTrainer attribute) (src.canns.trainer.OjaTrainer attribute) (src.canns.trainer.sanger.SangerTrainer attribute) (src.canns.trainer.SangerTrainer attribute) (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) left (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] length (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DVelocity attribute) linear_speed_gains (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) LinearLayer (class in src.canns.models.brain_inspired) (class in src.canns.models.brain_inspired.linear) list_datasets() (in module src.canns.data) (in module src.canns.data.datasets) load() (in module src.canns.data) (in module src.canns.data.datasets) load_checkpoint() (in module src.canns.analyzer.slow_points) (in module src.canns.analyzer.slow_points.checkpoint) load_file() (in module src.canns.data.datasets) load_grid_data() (in module src.canns.data) (in module src.canns.data.loaders) load_roi_data() (in module src.canns.data) (in module src.canns.data.loaders) load_trajectory_from_csv() (in module src.canns.pipeline) (in module src.canns.pipeline.theta_sweep) logl (src.canns.analyzer.data.cann1d.SiteBump attribute) lr_cooldown (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) lr_factor (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) lr_init (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) lr_patience (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) M m (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] make_candidate_centers() (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) make_conn() (src.canns.models.basic.cann.BaseCANN method) (src.canns.models.basic.cann.BaseCANN1D method) (src.canns.models.basic.cann.BaseCANN2D method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) make_connection() (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.GridCell2DVelocity method) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) make_Wg2p() (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) map2pi() (in module src.canns.task.open_loop_navigation) mapping_ratio (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) margin (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) max_height_value (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.data.cann1d.CANN1DPlotConfig attribute) max_iters (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) MAX_KERNEL_SIZE (src.canns.analyzer.data.cann1d.Constants attribute) max_n_unique (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) max_width_range (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.data.cann1d.CANN1DPlotConfig attribute) maxdim (src.canns.analyzer.data.cann2d.TDAConfig attribute) MEC_model_list (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] method (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) metric (src.canns.analyzer.data.cann2d.TDAConfig attribute) min_speed (src.canns.analyzer.data.cann2d.SpikeEmbeddingConfig attribute) mode (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) model (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer attribute) (src.canns.trainer.Trainer attribute) module src.canns src.canns.analyzer src.canns.analyzer.data src.canns.analyzer.data.cann1d src.canns.analyzer.data.cann2d src.canns.analyzer.metrics src.canns.analyzer.metrics.spatial_metrics src.canns.analyzer.metrics.systematic_ratemap src.canns.analyzer.metrics.utils src.canns.analyzer.model_specific src.canns.analyzer.model_specific.hopfield src.canns.analyzer.slow_points src.canns.analyzer.slow_points.checkpoint src.canns.analyzer.slow_points.finder src.canns.analyzer.slow_points.fixed_points src.canns.analyzer.slow_points.visualization src.canns.analyzer.visualization src.canns.analyzer.visualization.core src.canns.analyzer.visualization.core.animation src.canns.analyzer.visualization.core.config src.canns.analyzer.visualization.core.jupyter_utils src.canns.analyzer.visualization.core.rendering src.canns.analyzer.visualization.core.writers src.canns.analyzer.visualization.energy_plots src.canns.analyzer.visualization.spatial_plots src.canns.analyzer.visualization.spike_plots src.canns.analyzer.visualization.theta_sweep_plots src.canns.analyzer.visualization.tuning_plots src.canns.data src.canns.data.datasets src.canns.data.loaders src.canns.models src.canns.models.basic src.canns.models.basic.cann src.canns.models.basic.grid_cell src.canns.models.basic.hierarchical_model src.canns.models.basic.theta_sweep_model src.canns.models.brain_inspired src.canns.models.brain_inspired.hopfield src.canns.models.brain_inspired.linear src.canns.models.brain_inspired.spiking src.canns.models.hybrid src.canns.pipeline src.canns.pipeline.theta_sweep src.canns.task src.canns.task.closed_loop_navigation src.canns.task.navigation_base src.canns.task.open_loop_navigation src.canns.task.tracking src.canns.trainer src.canns.trainer.bcm src.canns.trainer.hebbian src.canns.trainer.oja src.canns.trainer.sanger src.canns.trainer.stdp src.canns.trainer.utils src.canns.typing src.canns.utils src.canns.utils.benchmark move_heading() (src.canns.models.basic.hierarchical_model.BandCell method) movement_direction (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) MovementCostGrid (class in src.canns.task) (class in src.canns.task.navigation_base) MULTIPROCESSING_CORES (src.canns.analyzer.data.cann2d.Constants attribute) N n_bump_max (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) n_frames (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) n_iters (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] n_iters_per_print_update (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) n_points (src.canns.analyzer.data.cann2d.TDAConfig attribute) n_roi (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) n_steps (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) nbs (src.canns.analyzer.data.cann2d.TDAConfig attribute) nbump (src.canns.analyzer.data.cann1d.SiteBump attribute) nframes (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.data.cann1d.CANN1DPlotConfig attribute) noise_0 (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] noise_strength (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) NonRecUnits (class in src.canns.models.basic.hierarchical_model) normalize_by_patterns (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) normalize_firing_rates() (in module src.canns.analyzer.metrics.utils) normalize_weight_rows() (in module src.canns.trainer.utils) normalize_weights (src.canns.trainer.oja.OjaTrainer attribute) (src.canns.trainer.OjaTrainer attribute) (src.canns.trainer.sanger.SangerTrainer attribute) (src.canns.trainer.SangerTrainer attribute) npoints (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.data.cann1d.CANN1DPlotConfig attribute) npoints_multiplier (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] num (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] num_dc (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) num_gc_1side (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) num_module (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] num_neurons (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) num_place (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) (src.canns.models.basic.HierarchicalNetwork attribute), [1] num_shuffles (src.canns.analyzer.data.cann2d.TDAConfig attribute) num_times (src.canns.analyzer.data.cann2d.TDAConfig attribute) num_workers (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.ParallelAnimationRenderer attribute) (src.canns.analyzer.visualization.core.rendering.ParallelAnimationRenderer attribute) (src.canns.analyzer.visualization.ParallelAnimationRenderer attribute) numangsint (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) NUMBA_THRESHOLD (src.canns.analyzer.data.cann1d.Constants attribute) O objects (src.canns.task.navigation_base.BaseNavigationTask attribute) OjaTrainer (class in src.canns.trainer) (class in src.canns.trainer.oja) OpenLoopNavigationData (class in src.canns.task.open_loop_navigation) OpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) optimize_colormap() (in module src.canns.analyzer.visualization.core.animation) OptimizedAnimationBase (class in src.canns.analyzer.visualization) (class in src.canns.analyzer.visualization.core) (class in src.canns.analyzer.visualization.core.animation) OptimizedAnimationWriter (class in src.canns.analyzer.visualization) (class in src.canns.analyzer.visualization.core) (class in src.canns.analyzer.visualization.core.writers) outlier_distance_scale (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) outlier_q_scale (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) output_dir (src.canns.pipeline.Pipeline attribute) output_size (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) P ParallelAnimationRenderer (class in src.canns.analyzer.visualization) (class in src.canns.analyzer.visualization.core) (class in src.canns.analyzer.visualization.core.rendering) pattern_energies (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer property) penbump (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) phase_offset (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) phase_shift (src.canns.models.basic.hierarchical_model.BandCell attribute) Pipeline (class in src.canns.pipeline) place_center (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] place_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] PlaceCellNetwork (class in src.canns.models.basic.theta_sweep_model) plot_2d_bump_on_manifold() (in module src.canns.analyzer.data.cann2d) plot_3d_bump_on_torus() (in module src.canns.analyzer.data.cann2d) plot_autocorrelation() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spatial_plots) plot_cohomap() (in module src.canns.analyzer.data.cann2d) plot_direction_cell_polar() (in module src.canns.analyzer.visualization.theta_sweep_plots) plot_firing_field_heatmap() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spatial_plots) plot_fixed_points_2d() (in module src.canns.analyzer.slow_points) (in module src.canns.analyzer.slow_points.visualization) plot_fixed_points_3d() (in module src.canns.analyzer.slow_points) (in module src.canns.analyzer.slow_points.visualization) plot_grid_cell_manifold() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.theta_sweep_plots) plot_grid_score() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spatial_plots) plot_grid_spacing_analysis() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spatial_plots) plot_population_activity_with_theta() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.theta_sweep_plots) plot_projection() (in module src.canns.analyzer.data.cann2d) PlotConfig (class in src.canns.analyzer.visualization) (class in src.canns.analyzer.visualization.core) (class in src.canns.analyzer.visualization.core.config) PlotConfigs (class in src.canns.analyzer.visualization) (class in src.canns.analyzer.visualization.core) (class in src.canns.analyzer.visualization.core.config) population_activity_heatmap() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spike_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) PopulationCoding1D (class in src.canns.task.tracking) PopulationCoding2D (class in src.canns.task.tracking) pos (src.canns.analyzer.data.cann1d.SiteBump attribute) position (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) position2phase() (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) positions (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] Postophase() (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) predict() (src.canns.models.brain_inspired.BrainInspiredModel method) (src.canns.trainer.bcm.BCMTrainer method) (src.canns.trainer.BCMTrainer method) (src.canns.trainer.hebbian.HebbianTrainer method) (src.canns.trainer.HebbianTrainer method) (src.canns.trainer.oja.OjaTrainer method) (src.canns.trainer.OjaTrainer method) (src.canns.trainer.sanger.SangerTrainer method) (src.canns.trainer.SangerTrainer method) (src.canns.trainer.stdp.STDPTrainer method) (src.canns.trainer.STDPTrainer method) (src.canns.trainer.Trainer method) predict_batch() (src.canns.trainer.hebbian.HebbianTrainer method) (src.canns.trainer.HebbianTrainer method) (src.canns.trainer.Trainer method) predict_state_attr (src.canns.models.brain_inspired.BrainInspiredModel property) (src.canns.models.brain_inspired.linear.LinearLayer property) (src.canns.models.brain_inspired.LinearLayer property) (src.canns.models.brain_inspired.spiking.SpikingLayer property) (src.canns.models.brain_inspired.SpikingLayer property) prefer_generic (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) prefer_generic_predict (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) prepare_output_dir() (src.canns.pipeline.Pipeline method) preprocess_spike_data() (in module src.canns.data.loaders) preserve_on_resize (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) print_summary() (src.canns.analyzer.slow_points.fixed_points.FixedPoints method) (src.canns.analyzer.slow_points.FixedPoints method) ProcessingError progress_bar (src.canns.analyzer.data.cann2d.TDAConfig attribute) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) proj_k (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] proj_k_x (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) proj_k_y (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) Q qstar (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] quality (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] quick_setup() (in module src.canns.data) (in module src.canns.data.datasets) R r (src.canns.models.basic.cann.CANN1D attribute) (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] r1 (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) r2 (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) random_seed (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) raster_plot() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.spike_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) rasterized (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) RasterScanNavigationTask (class in src.canns.task.open_loop_navigation) ratio (src.canns.models.basic.hierarchical_model.GridCell attribute) render() (src.canns.analyzer.visualization.core.ParallelAnimationRenderer method) (src.canns.analyzer.visualization.core.rendering.ParallelAnimationRenderer method) (src.canns.analyzer.visualization.ParallelAnimationRenderer method) render_animation() (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (src.canns.analyzer.visualization.core.OptimizedAnimationBase method) (src.canns.analyzer.visualization.OptimizedAnimationBase method) repeat (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) res (src.canns.analyzer.data.cann2d.SpikeEmbeddingConfig attribute) reset() (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.pipeline.Pipeline method) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) reset_state() (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.brain_inspired.spiking.SpikingLayer method) (src.canns.models.brain_inspired.SpikingLayer method) resize() (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.BrainInspiredModel method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.linear.LinearLayer method) (src.canns.models.brain_inspired.LinearLayer method) results (src.canns.pipeline.Pipeline attribute) rho (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] right (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] rng (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) rng_seed (src.canns.task.navigation_base.BaseNavigationTask attribute) rnn_model (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) rot (src.canns.models.basic.hierarchical_model.GridCell attribute) rot_vel (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) rotational_velocity_coherence_time (src.canns.task.navigation_base.BaseNavigationTask attribute) rotational_velocity_std (src.canns.task.navigation_base.BaseNavigationTask attribute) run() (src.canns.pipeline.Pipeline method) (src.canns.pipeline.theta_sweep.ThetaSweepPipeline method) (src.canns.pipeline.ThetaSweepPipeline method) run_steps (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) S s (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) SangerTrainer (class in src.canns.trainer) (class in src.canns.trainer.sanger) save_bbox_inches (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) save_checkpoint() (in module src.canns.analyzer.slow_points) (in module src.canns.analyzer.slow_points.checkpoint) save_dpi (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) save_format (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) save_path (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.PlotConfig attribute) savefig_kwargs (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) scale (src.canns.task.navigation_base.BaseNavigationTask attribute) set_grid_resolution() (src.canns.task.navigation_base.BaseNavigationTask method) set_patterns() (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer method) set_results() (src.canns.pipeline.Pipeline method) setup() (src.canns.analyzer.visualization.core.OptimizedAnimationWriter method) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter method) (src.canns.analyzer.visualization.OptimizedAnimationWriter method) shape (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) should_use_parallel() (in module src.canns.analyzer.visualization.core.rendering) show (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.data.cann2d.TDAConfig attribute) (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) show_conn() (src.canns.models.basic.cann.BaseCANN2D method) show_data() (src.canns.task.navigation_base.BaseNavigationTask method) show_geodesic_distance_matrix() (src.canns.task.navigation_base.BaseNavigationTask method) show_iteration_progress (src.canns.trainer.Trainer attribute) show_legend (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) show_progress_bar (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) show_trajectory_analysis() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) sig2 (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) sigma (src.canns.analyzer.data.cann2d.SpikeEmbeddingConfig attribute) sigma_diff (src.canns.analyzer.data.cann1d.BumpFitsConfig attribute) SiteBump (class in src.canns.analyzer.data.cann1d) size (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] smooth (src.canns.analyzer.data.cann2d.SpikeEmbeddingConfig attribute) SmoothTracking1D (class in src.canns.task.tracking) SmoothTracking2D (class in src.canns.task.tracking) spacing (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] spatial_nav_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) spatial_nav_task (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) speed (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) speed_coherence_time (src.canns.task.navigation_base.BaseNavigationTask attribute) SPEED_CONVERSION_FACTOR (src.canns.analyzer.data.cann2d.Constants attribute) speed_filter (src.canns.analyzer.data.cann2d.SpikeEmbeddingConfig attribute) speed_mean (src.canns.task.navigation_base.BaseNavigationTask attribute) speed_std (src.canns.task.navigation_base.BaseNavigationTask attribute) spike (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) spike_train_to_firing_rate() (in module src.canns.analyzer.metrics.utils) SpikeEmbeddingConfig (class in src.canns.analyzer.data.cann2d) SpikingLayer (class in src.canns.models.brain_inspired) (class in src.canns.models.brain_inspired.spiking) src.canns module src.canns.analyzer module src.canns.analyzer.data module src.canns.analyzer.data.cann1d module src.canns.analyzer.data.cann2d module src.canns.analyzer.metrics module src.canns.analyzer.metrics.spatial_metrics module src.canns.analyzer.metrics.systematic_ratemap module src.canns.analyzer.metrics.utils module src.canns.analyzer.model_specific module src.canns.analyzer.model_specific.hopfield module src.canns.analyzer.slow_points module src.canns.analyzer.slow_points.checkpoint module src.canns.analyzer.slow_points.finder module src.canns.analyzer.slow_points.fixed_points module src.canns.analyzer.slow_points.visualization module src.canns.analyzer.visualization module src.canns.analyzer.visualization.core module src.canns.analyzer.visualization.core.animation module src.canns.analyzer.visualization.core.config module src.canns.analyzer.visualization.core.jupyter_utils module src.canns.analyzer.visualization.core.rendering module src.canns.analyzer.visualization.core.writers module src.canns.analyzer.visualization.energy_plots module src.canns.analyzer.visualization.spatial_plots module src.canns.analyzer.visualization.spike_plots module src.canns.analyzer.visualization.theta_sweep_plots module src.canns.analyzer.visualization.tuning_plots module src.canns.data module src.canns.data.datasets module src.canns.data.loaders module src.canns.models module src.canns.models.basic module src.canns.models.basic.cann module src.canns.models.basic.grid_cell module src.canns.models.basic.hierarchical_model module src.canns.models.basic.theta_sweep_model module src.canns.models.brain_inspired module src.canns.models.brain_inspired.hopfield module src.canns.models.brain_inspired.linear module src.canns.models.brain_inspired.spiking module src.canns.models.hybrid module src.canns.pipeline module src.canns.pipeline.theta_sweep module src.canns.task module src.canns.task.closed_loop_navigation module src.canns.task.navigation_base module src.canns.task.open_loop_navigation module src.canns.task.tracking module src.canns.trainer module src.canns.trainer.bcm module src.canns.trainer.hebbian module src.canns.trainer.oja module src.canns.trainer.sanger module src.canns.trainer.stdp module src.canns.trainer.utils module src.canns.typing module src.canns.utils module src.canns.utils.benchmark module start_pos (src.canns.task.navigation_base.BaseNavigationTask attribute) state_attr (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) StateAwareRasterScanPolicy (class in src.canns.task.open_loop_navigation) stdp_kernel() (in module src.canns.trainer.utils) stdp_kernel_vec (in module src.canns.trainer.utils) STDPTrainer (class in src.canns.trainer) (class in src.canns.trainer.stdp) step_by_pos() (src.canns.task.closed_loop_navigation.ClosedLoopNavigationTask method) step_size (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) storage_capacity (src.canns.models.brain_inspired.AmariHopfieldNetwork property) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork property) stored_patterns (src.canns.analyzer.model_specific.hopfield.HopfieldAnalyzer attribute) subtract_mean (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) super_verbose (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) supports_blitting() (in module src.canns.analyzer.visualization.core.animation) synapses() (src.canns.models.basic.hierarchical_model.BandCell method) T tau (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DVelocity attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) tau_v (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) tda_vis() (in module src.canns.analyzer.data.cann2d) TDAConfig (class in src.canns.analyzer.data.cann2d) temperature (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) TemplateMatching1D (class in src.canns.task.tracking) TemplateMatching2D (class in src.canns.task.tracking) theta_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) theta_population_activity_static() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) theta_sweep_animation() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) theta_sweep_place_cell_animation() (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) ThetaSweepPipeline (class in src.canns.pipeline) (class in src.canns.pipeline.theta_sweep) thigmotaxis (src.canns.task.navigation_base.BaseNavigationTask attribute) threshold (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) threshold_tau (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) TIME_CONVERSION_FACTOR (src.canns.analyzer.data.cann2d.Constants attribute) time_steps_per_second (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) time_type (in module src.canns.typing) times (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) title (src.canns.analyzer.data.cann1d.AnimationConfig attribute) (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) TMazeClosedLoopNavigationTask (class in src.canns.task.closed_loop_navigation) TMazeOpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) TMazeRecessClosedLoopNavigationTask (class in src.canns.task.closed_loop_navigation) TMazeRecessOpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) to_matplotlib_kwargs() (src.canns.analyzer.visualization.core.config.PlotConfig method) (src.canns.analyzer.visualization.core.PlotConfig method) (src.canns.analyzer.visualization.PlotConfig method) to_savefig_kwargs() (src.canns.analyzer.visualization.core.config.PlotConfig method) (src.canns.analyzer.visualization.core.PlotConfig method) (src.canns.analyzer.visualization.PlotConfig method) tol_dq (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) tol_q (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) tol_unique (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPoints attribute), [1] total_steps (src.canns.task.closed_loop_navigation.ClosedLoopNavigationTask attribute) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) trace_decay (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) trace_post (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) trace_pre (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) track_blob_centers() (src.canns.models.basic.grid_cell.GridCell2DVelocity static method) (src.canns.models.basic.GridCell2DVelocity static method) train() (src.canns.trainer.bcm.BCMTrainer method) (src.canns.trainer.BCMTrainer method) (src.canns.trainer.hebbian.HebbianTrainer method) (src.canns.trainer.HebbianTrainer method) (src.canns.trainer.oja.OjaTrainer method) (src.canns.trainer.OjaTrainer method) (src.canns.trainer.sanger.SangerTrainer method) (src.canns.trainer.SangerTrainer method) (src.canns.trainer.stdp.STDPTrainer method) (src.canns.trainer.STDPTrainer method) (src.canns.trainer.Trainer method) Trainer (class in src.canns.trainer) trajectory_data (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) tuning_curve() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.tuning_plots) (src.canns.analyzer.visualization.core.config.PlotConfigs static method) (src.canns.analyzer.visualization.core.PlotConfigs static method) (src.canns.analyzer.visualization.PlotConfigs static method) turn_steps_remaining (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) U u (src.canns.models.basic.cann.CANN1D attribute) (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] update() (src.canns.models.basic.cann.CANN1D method) (src.canns.models.basic.cann.CANN1D_SFA method) (src.canns.models.basic.cann.CANN2D method) (src.canns.models.basic.cann.CANN2D_SFA method) (src.canns.models.basic.CANN1D method) (src.canns.models.basic.CANN1D_SFA method) (src.canns.models.basic.CANN2D method) (src.canns.models.basic.CANN2D_SFA method) (src.canns.models.basic.grid_cell.GridCell2DPosition method) (src.canns.models.basic.grid_cell.GridCell2DVelocity method) (src.canns.models.basic.GridCell2DPosition method) (src.canns.models.basic.GridCell2DVelocity method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalNetwork method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (src.canns.models.basic.hierarchical_model.NonRecUnits method) (src.canns.models.basic.HierarchicalNetwork method) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.linear.LinearLayer method) (src.canns.models.brain_inspired.LinearLayer method) (src.canns.models.brain_inspired.spiking.SpikingLayer method) (src.canns.models.brain_inspired.SpikingLayer method) update_frame() (src.canns.analyzer.visualization.core.animation.OptimizedAnimationBase method) (src.canns.analyzer.visualization.core.OptimizedAnimationBase method) (src.canns.analyzer.visualization.OptimizedAnimationBase method) update_spike_buffer() (in module src.canns.trainer.utils) update_threshold() (src.canns.models.brain_inspired.linear.LinearLayer method) (src.canns.models.brain_inspired.LinearLayer method) use_bcm_threshold (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) use_parallel (src.canns.analyzer.visualization.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.AnimationConfig attribute), [1] (src.canns.analyzer.visualization.core.config.AnimationConfig attribute), [1] use_sparse (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) V v (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) v_reset (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) validate_grid_data() (in module src.canns.data.loaders) validate_roi_data() (in module src.canns.data.loaders) value_bump (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) value_grid (src.canns.models.basic.grid_cell.GridCell2DPosition attribute), [1] (src.canns.models.basic.GridCell2DPosition attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] vec_pref (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute), [1] (src.canns.models.basic.GridCell2DVelocity attribute), [1] velocity (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) verbose (src.canns.analyzer.slow_points.finder.FixedPointFinder attribute) (src.canns.analyzer.slow_points.FixedPointFinder attribute) (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) VideoFormat (in module src.canns.analyzer.visualization.core.writers) W W (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) W_a (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) W_beta (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) W_gamma (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) W_l (src.canns.models.basic.grid_cell.GridCell2DVelocity attribute) (src.canns.models.basic.GridCell2DVelocity attribute) w_L2S (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] w_max (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) w_min (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) w_S2L (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] wall_repel_distance (src.canns.task.navigation_base.BaseNavigationTask attribute) wall_repel_strength (src.canns.task.navigation_base.BaseNavigationTask attribute) walls (src.canns.task.navigation_base.BaseNavigationTask attribute) warn_double_rendering() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.writers) warn_gif_format() (in module src.canns.analyzer.visualization) (in module src.canns.analyzer.visualization.core) (in module src.canns.analyzer.visualization.core.writers) weight_attr (src.canns.models.brain_inspired.BrainInspiredModel property) (src.canns.models.brain_inspired.linear.LinearLayer property) (src.canns.models.brain_inspired.LinearLayer property) (src.canns.models.brain_inspired.spiking.SpikingLayer property) (src.canns.models.brain_inspired.SpikingLayer property) (src.canns.trainer.bcm.BCMTrainer attribute) (src.canns.trainer.BCMTrainer attribute) (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) (src.canns.trainer.oja.OjaTrainer attribute) (src.canns.trainer.OjaTrainer attribute) (src.canns.trainer.sanger.SangerTrainer attribute) (src.canns.trainer.SangerTrainer attribute) (src.canns.trainer.stdp.STDPTrainer attribute) (src.canns.trainer.STDPTrainer attribute) Wg2p (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) width (src.canns.task.navigation_base.BaseNavigationTask attribute) (src.canns.task.open_loop_navigation.StateAwareRasterScanPolicy attribute) window_size (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute) writer (src.canns.analyzer.visualization.core.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.core.writers.OptimizedAnimationWriter attribute) (src.canns.analyzer.visualization.OptimizedAnimationWriter attribute) X x (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) (src.canns.models.brain_inspired.spiking.SpikingLayer attribute) (src.canns.models.brain_inspired.SpikingLayer attribute) x_centers (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) x_edges (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) x_grid (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) x_init (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] x_range (src.canns.models.basic.hierarchical_model.GridCell attribute) xlabel (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) xstar (src.canns.analyzer.slow_points.fixed_points.FixedPoints attribute), [1] (src.canns.analyzer.slow_points.FixedPoints attribute), [1] Y y (src.canns.models.brain_inspired.linear.LinearLayer attribute) (src.canns.models.brain_inspired.LinearLayer attribute) y_centers (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) y_edges (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) y_grid (src.canns.models.basic.grid_cell.GridCell2DPosition attribute) (src.canns.models.basic.GridCell2DPosition attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) ylabel (src.canns.analyzer.visualization.core.config.PlotConfig attribute) (src.canns.analyzer.visualization.core.PlotConfig attribute) (src.canns.analyzer.visualization.PlotConfig attribute) Z z_max (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) z_min (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) z_range (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) zero_diagonal (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) zlabel (src.canns.analyzer.data.cann2d.CANN2DPlotConfig attribute)