Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z _ __post_init__() (src.canns.analyzer.experimental_data.PlotConfig method) (src.canns.analyzer.plotting.config.PlotConfig method) (src.canns.analyzer.plotting.PlotConfig method) __version__ (in module src.canns) A A (src.canns.models.basic.cann.BaseCANN1D attribute) a (src.canns.models.basic.cann.BaseCANN1D attribute) A (src.canns.models.basic.cann.BaseCANN2D attribute) a (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] A (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] a (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] A (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) a (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) A (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) a (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) A (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) a (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) accessible_indices (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.task.GeodesicDistanceResult attribute) (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.GeodesicDistanceResult attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) accessible_mask (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) activate() (src.canns.models.basic.hierarchical_model.NonRecUnits method) activation (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) active_times (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) adaptation_strength (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) after_duration (src.canns.task.tracking.PopulationCoding1D attribute) (src.canns.task.tracking.PopulationCoding2D attribute) agent (src.canns.task.navigation_base.BaseNavigationTask attribute) agent_params (src.canns.task.navigation_base.BaseNavigationTask attribute) AmariHopfieldNetwork (class in src.canns.models.brain_inspired) (class in src.canns.models.brain_inspired.hopfield) ampli (src.canns.analyzer.experimental_data.cann1d.SiteBump attribute) ampli_min (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) ang_speed_gains (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) ang_velocity (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) angle (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] AnimationConfig (class in src.canns.analyzer.experimental_data.cann1d) AnimationError AntiHebbianTrainer (class in src.canns.trainer) (class in src.canns.trainer.hebbian) apply_hebbian_learning() (src.canns.models.brain_inspired.BrainInspiredModel method) aspect (src.canns.task.navigation_base.BaseNavigationTask attribute) asyn (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) average_firing_rate_plot() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.spikes) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) B band_cell_x (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cell_y (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cell_z (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] band_cells (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] band_x_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute) (src.canns.models.basic.HierarchicalNetwork attribute) band_y_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute) (src.canns.models.basic.HierarchicalNetwork attribute) BandCell (class in src.canns.models.basic.hierarchical_model) BASE_RADIUS (src.canns.analyzer.experimental_data.cann1d.Constants attribute) BaseCANN (class in src.canns.models.basic.cann) BaseCANN1D (class in src.canns.models.basic.cann) BaseCANN2D (class in src.canns.models.basic.cann) BaseNavigationTask (class in src.canns.task.navigation_base) batch_process_trajectories() (in module src.canns.pipeline) (in module src.canns.pipeline.theta_sweep) before_duration (src.canns.task.tracking.PopulationCoding1D attribute) (src.canns.task.tracking.PopulationCoding2D attribute) benchmark() (in module src.canns.misc.benchmark) beta (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) boundary (src.canns.task.navigation_base.BaseNavigationTask attribute) boundary_conditions (src.canns.task.navigation_base.BaseNavigationTask attribute) BrainInspiredModel (class in src.canns.models.brain_inspired) BrainInspiredModelGroup (class in src.canns.models.brain_inspired) build_movement_cost_grid() (src.canns.task.navigation_base.BaseNavigationTask method) bump_fits() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann1d) bump_selection (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.cann1d.CANN1DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN1DPlotConfig attribute) BumpFitsConfig (class in src.canns.analyzer.experimental_data.cann1d) C calculate_dist() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) calculate_input_from_conjgc() (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) calculate_theta_modulation() (in module src.canns.models.basic.theta_sweep_model) calculate_theta_sweep_data() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) candidate_centers (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] CANN1D (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN1D_SFA (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN1DError CANN1DPlotConfig (class in src.canns.analyzer.experimental_data) (class in src.canns.analyzer.experimental_data.cann1d) CANN2D (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN2D_SFA (class in src.canns.models.basic) (class in src.canns.models.basic.cann) CANN2DError CANN2DPlotConfig (class in src.canns.analyzer.experimental_data) (class in src.canns.analyzer.experimental_data.cann2d) cell_num (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] center (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) center_ideal (src.canns.models.basic.hierarchical_model.BandCell attribute) center_phase (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) center_position (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) circle_period() (src.canns.models.basic.hierarchical_model.GridCell method) clabel (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) clone() (src.canns.analyzer.experimental_data.cann1d.SiteBump method) ClosedLoopNavigationTask (class in src.canns.task.closed_loop_navigation) coeff (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) color (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) compiled_prediction (src.canns.trainer.Trainer attribute) compute_firing_field() (in module src.canns.analyzer.spatial) compute_geodesic_distance_matrix() (src.canns.task.navigation_base.BaseNavigationTask method) compute_overlap() (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) configure_progress() (src.canns.trainer.Trainer method) conn_mat (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] conn_noise (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) Constants (class in src.canns.analyzer.experimental_data.cann1d) (class in src.canns.analyzer.experimental_data.cann2d) coor_transform (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] coor_transform_inv (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) cost_grid (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.task.GeodesicDistanceResult attribute) (src.canns.task.navigation_base.BaseNavigationTask attribute) (src.canns.task.navigation_base.GeodesicDistanceResult attribute) costs (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) create_1d_bump_animation() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann1d) create_theta_sweep_grid_cell_animation() (in module src.canns.analyzer.theta_sweep) create_theta_sweep_place_cell_animation() (in module src.canns.analyzer.theta_sweep) D D (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] data (in module src.canns.analyzer.experimental_data.cann1d) (in module src.canns.analyzer.experimental_data.cann2d) DataLoadError decode() (src.canns.models.basic.hierarchical_model.GaussRecUnits method) decode_circular_coordinates() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann2d) decoded_pos (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute) (src.canns.models.basic.HierarchicalNetwork attribute) DEFAULT_DPI (src.canns.analyzer.experimental_data.cann1d.Constants attribute) (src.canns.analyzer.experimental_data.cann2d.Constants attribute) DEFAULT_FIGSIZE (src.canns.analyzer.experimental_data.cann1d.Constants attribute) (src.canns.analyzer.experimental_data.cann2d.Constants attribute) dim (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) dimensionality (src.canns.task.navigation_base.BaseNavigationTask attribute) direction_cell_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) direction_network (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) DirectionCellNetwork (class in src.canns.models.basic.theta_sweep_model) dist() (src.canns.models.basic.cann.BaseCANN1D method) (src.canns.models.basic.cann.BaseCANN2D method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (src.canns.models.basic.hierarchical_model.NonRecUnits method) distances (src.canns.task.GeodesicDistanceResult attribute) (src.canns.task.navigation_base.GeodesicDistanceResult attribute) do_shuffle (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) dpi (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) dt (src.canns.analyzer.experimental_data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.analyzer.experimental_data.SpikeEmbeddingConfig attribute) (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) (src.canns.task.navigation_base.BaseNavigationTask attribute) duration (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) dx (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.BaseNavigationTask attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) dxy (src.canns.models.basic.hierarchical_model.GridCell attribute) dy (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) E embed_spike_trains() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann2d) energy (src.canns.models.brain_inspired.AmariHopfieldNetwork property) (src.canns.models.brain_inspired.BrainInspiredModel property) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork property) energy_landscape_1d_animation() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.energy) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) energy_landscape_1d_static() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.energy) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) energy_landscape_2d_animation() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.energy) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) energy_landscape_2d_static() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.energy) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) env (src.canns.task.navigation_base.BaseNavigationTask attribute) env_params (src.canns.task.navigation_base.BaseNavigationTask attribute) env_size (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) F figsize (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) firing_rate_to_spike_train() (in module src.canns.analyzer.utils) FittingError for_animation() (src.canns.analyzer.experimental_data.PlotConfig class method) (src.canns.analyzer.plotting.config.PlotConfig class method) (src.canns.analyzer.plotting.PlotConfig class method) for_bump_animation() (src.canns.analyzer.experimental_data.cann1d.CANN1DPlotConfig class method) (src.canns.analyzer.experimental_data.CANN1DPlotConfig class method) for_projection_3d() (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig class method) (src.canns.analyzer.experimental_data.CANN2DPlotConfig class method) for_static_plot() (src.canns.analyzer.experimental_data.PlotConfig class method) (src.canns.analyzer.plotting.config.PlotConfig class method) (src.canns.analyzer.plotting.PlotConfig class method) for_torus_animation() (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig class method) (src.canns.analyzer.experimental_data.CANN2DPlotConfig class method) fps (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) frame_step (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) G g (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) gain (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] GAUSSIAN_SIGMA_FACTOR (src.canns.analyzer.experimental_data.cann2d.Constants attribute) gaussian_smooth_heatmaps() (in module src.canns.analyzer.spatial) GaussRecUnits (class in src.canns.models.basic.hierarchical_model) gc_bump (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) geodesic_result (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] (src.canns.task.navigation_base.BaseNavigationTask attribute) GeodesicDistanceResult (class in src.canns.task) (class in src.canns.task.navigation_base) get_bump_center() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork static method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) get_cell_index() (src.canns.task.MovementCostGrid method) (src.canns.task.navigation_base.MovementCostGrid method) get_center() (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GridCell method) get_data() (src.canns.task.closed_loop_navigation.ClosedLoopNavigationTask method) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) get_empty_trajectory() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) get_geodesic_index_by_pos() (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (src.canns.task.navigation_base.BaseNavigationTask method) get_input() (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) get_results() (src.canns.pipeline.Pipeline method) get_stimulus_by_pos() (src.canns.models.basic.cann.BaseCANN method) (src.canns.models.basic.cann.BaseCANN1D method) (src.canns.models.basic.cann.BaseCANN2D method) (src.canns.models.basic.hierarchical_model.BandCell method) get_unique_activity_bump() (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) grid (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) grid_cell (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] grid_cell_manifold_static() (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) grid_cell_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) grid_dx (src.canns.task.navigation_base.BaseNavigationTask attribute) grid_dy (src.canns.task.navigation_base.BaseNavigationTask attribute) grid_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute) (src.canns.models.basic.HierarchicalNetwork attribute) grid_network (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) grid_output (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) GridCell (class in src.canns.models.basic.hierarchical_model) GridCellNetwork (class in src.canns.models.basic.theta_sweep_model) H handle_periodic_condition() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork static method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) HAS_NUMBA (in module src.canns.analyzer.experimental_data.cann1d) (in module src.canns.analyzer.experimental_data.cann2d) has_results() (src.canns.pipeline.Pipeline method) hd_angle (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) head_direction_smoothing_timescale (src.canns.task.navigation_base.BaseNavigationTask attribute) HebbianTrainer (class in src.canns.trainer) (class in src.canns.trainer.hebbian) height (src.canns.task.navigation_base.BaseNavigationTask attribute) HierarchicalNetwork (class in src.canns.models.basic) (class in src.canns.models.basic.hierarchical_model) HierarchicalPathIntegrationModel (class in src.canns.models.basic.hierarchical_model) holes (src.canns.task.navigation_base.BaseNavigationTask attribute) I Iext_pair_type (in module src.canns.typing) Iext_type (in module src.canns.typing) import_data() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) init_state() (src.canns.models.basic.cann.CANN1D method) (src.canns.models.basic.cann.CANN1D_SFA method) (src.canns.models.basic.cann.CANN2D method) (src.canns.models.basic.cann.CANN2D_SFA method) (src.canns.models.basic.CANN1D method) (src.canns.models.basic.CANN1D_SFA method) (src.canns.models.basic.CANN2D method) (src.canns.models.basic.CANN2D_SFA method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalNetwork method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (src.canns.models.basic.hierarchical_model.NonRecUnits method) (src.canns.models.basic.HierarchicalNetwork method) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) initial_head_direction (src.canns.task.navigation_base.BaseNavigationTask attribute) input (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute) input_bump() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) INT32_MAX (in module src.canns.task) J J (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] J0 (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) jc (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) Jc() (src.canns.models.basic.hierarchical_model.GaussRecUnits method) K k (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) kappa (src.canns.analyzer.experimental_data.cann1d.SiteBump attribute) kappa_mean (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) kwargs (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) L Lambda (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] left (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] length (src.canns.models.basic.cann.BaseCANN2D attribute) linear_speed_gains (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) load_grid_data() (in module src.canns.analyzer.experimental_data) load_roi_data() (in module src.canns.analyzer.experimental_data) load_trajectory_from_csv() (in module src.canns.pipeline) (in module src.canns.pipeline.theta_sweep) logl (src.canns.analyzer.experimental_data.cann1d.SiteBump attribute) M m (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute), [1] make_candidate_centers() (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) make_conn() (src.canns.models.basic.cann.BaseCANN method) (src.canns.models.basic.cann.BaseCANN1D method) (src.canns.models.basic.cann.BaseCANN2D method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) make_connection() (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) make_Wg2p() (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) map2pi() (in module src.canns.task.open_loop_navigation) mapping_ratio (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) max_height_value (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.cann1d.CANN1DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN1DPlotConfig attribute) MAX_KERNEL_SIZE (src.canns.analyzer.experimental_data.cann1d.Constants attribute) max_width_range (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.cann1d.CANN1DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN1DPlotConfig attribute) maxdim (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) MEC_model_list (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] metric (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) min_speed (src.canns.analyzer.experimental_data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.analyzer.experimental_data.SpikeEmbeddingConfig attribute) model (src.canns.trainer.Trainer attribute) module src.canns src.canns.analyzer src.canns.analyzer.experimental_data src.canns.analyzer.experimental_data.cann1d src.canns.analyzer.experimental_data.cann2d src.canns.analyzer.plotting src.canns.analyzer.plotting.config src.canns.analyzer.plotting.energy src.canns.analyzer.plotting.spatial src.canns.analyzer.plotting.spikes src.canns.analyzer.plotting.tuning src.canns.analyzer.spatial src.canns.analyzer.theta_sweep src.canns.analyzer.utils src.canns.misc src.canns.misc.benchmark src.canns.models src.canns.models.basic src.canns.models.basic.cann src.canns.models.basic.hierarchical_model src.canns.models.basic.theta_sweep_model src.canns.models.brain_inspired src.canns.models.brain_inspired.hopfield src.canns.models.hybrid src.canns.pipeline src.canns.pipeline.theta_sweep src.canns.task src.canns.task.closed_loop_navigation src.canns.task.navigation_base src.canns.task.open_loop_navigation src.canns.task.tracking src.canns.trainer src.canns.trainer.hebbian src.canns.typing move_heading() (src.canns.models.basic.hierarchical_model.BandCell method) movement_direction (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) MovementCostGrid (class in src.canns.task) (class in src.canns.task.navigation_base) MULTIPROCESSING_CORES (src.canns.analyzer.experimental_data.cann2d.Constants attribute) N n_bump_max (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) n_frames (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) n_points (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) n_roi (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) n_steps (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) nbs (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) nbump (src.canns.analyzer.experimental_data.cann1d.SiteBump attribute) nframes (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.cann1d.CANN1DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN1DPlotConfig attribute) noise_0 (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] noise_strength (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) NonRecUnits (class in src.canns.models.basic.hierarchical_model) normalize_by_patterns (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) normalize_firing_rates() (in module src.canns.analyzer.utils) npoints (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.cann1d.CANN1DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN1DPlotConfig attribute) num (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] num_dc (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) num_gc_1side (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) num_module (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] num_neurons (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) num_place (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) (src.canns.models.basic.HierarchicalNetwork attribute), [1] num_shuffles (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) num_times (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) numangsint (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) NUMBA_THRESHOLD (src.canns.analyzer.experimental_data.cann1d.Constants attribute) O objects (src.canns.task.navigation_base.BaseNavigationTask attribute) OpenLoopNavigationData (class in src.canns.task.open_loop_navigation) OpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) output_dir (src.canns.pipeline.Pipeline attribute) P penbump (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) phase_offset (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) phase_shift (src.canns.models.basic.hierarchical_model.BandCell attribute) Pipeline (class in src.canns.pipeline) place_center (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute), [1] (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute), [1] (src.canns.models.basic.HierarchicalNetwork attribute), [1] place_fr (src.canns.models.basic.hierarchical_model.HierarchicalNetwork attribute) (src.canns.models.basic.HierarchicalNetwork attribute) PlaceCellNetwork (class in src.canns.models.basic.theta_sweep_model) plot_3d_bump_on_torus() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann2d) plot_direction_cell_polar() (in module src.canns.analyzer.theta_sweep) plot_firing_field_heatmap() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.spatial) plot_grid_cell_manifold() (in module src.canns.analyzer.theta_sweep) plot_population_activity_with_theta() (in module src.canns.analyzer.theta_sweep) plot_projection() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann2d) PlotConfig (class in src.canns.analyzer.experimental_data) (class in src.canns.analyzer.plotting) (class in src.canns.analyzer.plotting.config) PlotConfigs (class in src.canns.analyzer.plotting) (class in src.canns.analyzer.plotting.config) population_activity_heatmap() (in module src.canns.analyzer.plotting.spikes) PopulationCoding1D (class in src.canns.task.tracking) PopulationCoding2D (class in src.canns.task.tracking) pos (src.canns.analyzer.experimental_data.cann1d.SiteBump attribute) position (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) position2phase() (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) Postophase() (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) predict() (src.canns.models.brain_inspired.BrainInspiredModel method) (src.canns.trainer.hebbian.HebbianTrainer method) (src.canns.trainer.HebbianTrainer method) (src.canns.trainer.Trainer method) predict_batch() (src.canns.trainer.hebbian.HebbianTrainer method) (src.canns.trainer.HebbianTrainer method) (src.canns.trainer.Trainer method) predict_state_attr (src.canns.models.brain_inspired.BrainInspiredModel property) prefer_generic (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) prefer_generic_predict (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) prepare_output_dir() (src.canns.pipeline.Pipeline method) preserve_on_resize (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) ProcessingError progress_bar (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) proj_k (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] proj_k_x (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) proj_k_y (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) R r (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) r1 (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) r2 (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) random_seed (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) raster_plot() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.spikes) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) ratio (src.canns.models.basic.hierarchical_model.GridCell attribute) repeat (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) res (src.canns.analyzer.experimental_data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.analyzer.experimental_data.SpikeEmbeddingConfig attribute) reset() (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.pipeline.Pipeline method) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) reset_state() (src.canns.models.basic.hierarchical_model.GridCell method) resize() (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.BrainInspiredModel method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) results (src.canns.pipeline.Pipeline attribute) rho (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] right (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] rot (src.canns.models.basic.hierarchical_model.GridCell attribute) rot_vel (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) rotational_velocity_coherence_time (src.canns.task.navigation_base.BaseNavigationTask attribute) rotational_velocity_std (src.canns.task.navigation_base.BaseNavigationTask attribute) run() (src.canns.pipeline.Pipeline method) (src.canns.pipeline.theta_sweep.ThetaSweepPipeline method) (src.canns.pipeline.ThetaSweepPipeline method) run_steps (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) S save_path (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) scale (src.canns.task.navigation_base.BaseNavigationTask attribute) set_grid_resolution() (src.canns.task.navigation_base.BaseNavigationTask method) set_results() (src.canns.pipeline.Pipeline method) shape (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) show (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.cann2d.TDAConfig attribute) (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.experimental_data.TDAConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) show_conn() (src.canns.models.basic.cann.BaseCANN2D method) show_data() (src.canns.task.navigation_base.BaseNavigationTask method) show_geodesic_distance_matrix() (src.canns.task.navigation_base.BaseNavigationTask method) show_iteration_progress (src.canns.trainer.Trainer attribute) show_legend (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) show_progress_bar (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) show_trajectory_analysis() (src.canns.task.open_loop_navigation.OpenLoopNavigationTask method) sig2 (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) sigma (src.canns.analyzer.experimental_data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.analyzer.experimental_data.SpikeEmbeddingConfig attribute) sigma_diff (src.canns.analyzer.experimental_data.cann1d.BumpFitsConfig attribute) SiteBump (class in src.canns.analyzer.experimental_data.cann1d) size (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] smooth (src.canns.analyzer.experimental_data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.analyzer.experimental_data.SpikeEmbeddingConfig attribute) SmoothTracking1D (class in src.canns.task.tracking) SmoothTracking2D (class in src.canns.task.tracking) spacing (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] spatial_nav_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) spatial_nav_task (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) speed (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) speed_coherence_time (src.canns.task.navigation_base.BaseNavigationTask attribute) SPEED_CONVERSION_FACTOR (src.canns.analyzer.experimental_data.cann2d.Constants attribute) speed_filter (src.canns.analyzer.experimental_data.cann2d.SpikeEmbeddingConfig attribute) (src.canns.analyzer.experimental_data.SpikeEmbeddingConfig attribute) speed_mean (src.canns.task.navigation_base.BaseNavigationTask attribute) speed_std (src.canns.task.navigation_base.BaseNavigationTask attribute) spike_train_to_firing_rate() (in module src.canns.analyzer.utils) SpikeEmbeddingConfig (class in src.canns.analyzer.experimental_data) (class in src.canns.analyzer.experimental_data.cann2d) src.canns module src.canns.analyzer module src.canns.analyzer.experimental_data module src.canns.analyzer.experimental_data.cann1d module src.canns.analyzer.experimental_data.cann2d module src.canns.analyzer.plotting module src.canns.analyzer.plotting.config module src.canns.analyzer.plotting.energy module src.canns.analyzer.plotting.spatial module src.canns.analyzer.plotting.spikes module src.canns.analyzer.plotting.tuning module src.canns.analyzer.spatial module src.canns.analyzer.theta_sweep module src.canns.analyzer.utils module src.canns.misc module src.canns.misc.benchmark module src.canns.models module src.canns.models.basic module src.canns.models.basic.cann module src.canns.models.basic.hierarchical_model module src.canns.models.basic.theta_sweep_model module src.canns.models.brain_inspired module src.canns.models.brain_inspired.hopfield module src.canns.models.hybrid module src.canns.pipeline module src.canns.pipeline.theta_sweep module src.canns.task module src.canns.task.closed_loop_navigation module src.canns.task.navigation_base module src.canns.task.open_loop_navigation module src.canns.task.tracking module src.canns.trainer module src.canns.trainer.hebbian module src.canns.typing module start_pos (src.canns.task.navigation_base.BaseNavigationTask attribute) state_attr (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) step_by_pos() (src.canns.task.closed_loop_navigation.ClosedLoopNavigationTask method) storage_capacity (src.canns.models.brain_inspired.AmariHopfieldNetwork property) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork property) subtract_mean (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) synapses() (src.canns.models.basic.hierarchical_model.BandCell method) T tau (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) tau_v (src.canns.models.basic.cann.CANN1D_SFA attribute) (src.canns.models.basic.cann.CANN2D_SFA attribute) (src.canns.models.basic.CANN1D_SFA attribute) (src.canns.models.basic.CANN2D_SFA attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) tda_vis() (in module src.canns.analyzer.experimental_data) (in module src.canns.analyzer.experimental_data.cann2d) TDAConfig (class in src.canns.analyzer.experimental_data) (class in src.canns.analyzer.experimental_data.cann2d) temperature (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) TemplateMatching1D (class in src.canns.task.tracking) TemplateMatching2D (class in src.canns.task.tracking) theta_params (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) theta_population_activity_static() (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) theta_sweep_animation() (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) ThetaSweepPipeline (class in src.canns.pipeline) (class in src.canns.pipeline.theta_sweep) thigmotaxis (src.canns.task.navigation_base.BaseNavigationTask attribute) threshold (src.canns.models.brain_inspired.AmariHopfieldNetwork attribute) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork attribute) TIME_CONVERSION_FACTOR (src.canns.analyzer.experimental_data.cann2d.Constants attribute) time_steps_per_second (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) time_type (in module src.canns.typing) times (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) title (src.canns.analyzer.experimental_data.cann1d.AnimationConfig attribute) (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) TMazeClosedLoopNavigationTask (class in src.canns.task.closed_loop_navigation) TMazeOpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) TMazeRecessClosedLoopNavigationTask (class in src.canns.task.closed_loop_navigation) TMazeRecessOpenLoopNavigationTask (class in src.canns.task.open_loop_navigation) to_matplotlib_kwargs() (src.canns.analyzer.experimental_data.PlotConfig method) (src.canns.analyzer.plotting.config.PlotConfig method) (src.canns.analyzer.plotting.PlotConfig method) total_steps (src.canns.task.closed_loop_navigation.ClosedLoopNavigationTask attribute) (src.canns.task.open_loop_navigation.OpenLoopNavigationTask attribute) train() (src.canns.trainer.hebbian.HebbianTrainer method) (src.canns.trainer.HebbianTrainer method) (src.canns.trainer.Trainer method) Trainer (class in src.canns.trainer) trajectory_data (src.canns.pipeline.theta_sweep.ThetaSweepPipeline attribute) (src.canns.pipeline.ThetaSweepPipeline attribute) tuning_curve() (in module src.canns.analyzer.plotting) (in module src.canns.analyzer.plotting.tuning) (src.canns.analyzer.plotting.config.PlotConfigs static method) (src.canns.analyzer.plotting.PlotConfigs static method) U u (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute) (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) update() (src.canns.models.basic.cann.CANN1D method) (src.canns.models.basic.cann.CANN1D_SFA method) (src.canns.models.basic.cann.CANN2D method) (src.canns.models.basic.cann.CANN2D_SFA method) (src.canns.models.basic.CANN1D method) (src.canns.models.basic.CANN1D_SFA method) (src.canns.models.basic.CANN2D method) (src.canns.models.basic.CANN2D_SFA method) (src.canns.models.basic.hierarchical_model.BandCell method) (src.canns.models.basic.hierarchical_model.GaussRecUnits method) (src.canns.models.basic.hierarchical_model.GridCell method) (src.canns.models.basic.hierarchical_model.HierarchicalNetwork method) (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel method) (src.canns.models.basic.hierarchical_model.NonRecUnits method) (src.canns.models.basic.HierarchicalNetwork method) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork method) (src.canns.models.basic.theta_sweep_model.GridCellNetwork method) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork method) (src.canns.models.brain_inspired.AmariHopfieldNetwork method) (src.canns.models.brain_inspired.hopfield.AmariHopfieldNetwork method) V v (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) validate_grid_data() (in module src.canns.analyzer.experimental_data) validate_roi_data() (in module src.canns.analyzer.experimental_data) value_bump (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) value_grid (src.canns.models.basic.hierarchical_model.GridCell attribute), [1] (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute), [1] velocity (src.canns.task.open_loop_navigation.OpenLoopNavigationData attribute) W w_L2S (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] w_S2L (src.canns.models.basic.hierarchical_model.BandCell attribute), [1] wall_repel_distance (src.canns.task.navigation_base.BaseNavigationTask attribute) wall_repel_strength (src.canns.task.navigation_base.BaseNavigationTask attribute) walls (src.canns.task.navigation_base.BaseNavigationTask attribute) weight_attr (src.canns.models.brain_inspired.BrainInspiredModel property) (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) Wg2p (src.canns.models.basic.hierarchical_model.HierarchicalPathIntegrationModel attribute) width (src.canns.task.navigation_base.BaseNavigationTask attribute) window_size (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute) X x (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute), [1] (src.canns.models.basic.theta_sweep_model.PlaceCellNetwork attribute) x_centers (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) x_edges (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) x_grid (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) x_range (src.canns.models.basic.hierarchical_model.GridCell attribute) xlabel (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) Y y_centers (src.canns.task.MovementCostGrid property) (src.canns.task.navigation_base.MovementCostGrid property) y_edges (src.canns.task.MovementCostGrid attribute) (src.canns.task.navigation_base.MovementCostGrid attribute) y_grid (src.canns.models.basic.hierarchical_model.GridCell attribute) (src.canns.models.basic.theta_sweep_model.GridCellNetwork attribute) ylabel (src.canns.analyzer.experimental_data.PlotConfig attribute) (src.canns.analyzer.plotting.config.PlotConfig attribute) (src.canns.analyzer.plotting.PlotConfig attribute) Z z_max (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) z_min (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) z_range (src.canns.models.basic.cann.BaseCANN1D attribute) (src.canns.models.basic.cann.BaseCANN2D attribute) (src.canns.models.basic.hierarchical_model.BandCell attribute) (src.canns.models.basic.hierarchical_model.GaussRecUnits attribute), [1] (src.canns.models.basic.hierarchical_model.NonRecUnits attribute), [1] (src.canns.models.basic.theta_sweep_model.DirectionCellNetwork attribute) zero_diagonal (src.canns.trainer.hebbian.HebbianTrainer attribute) (src.canns.trainer.HebbianTrainer attribute) zlabel (src.canns.analyzer.experimental_data.cann2d.CANN2DPlotConfig attribute) (src.canns.analyzer.experimental_data.CANN2DPlotConfig attribute)